Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: dna binding

Source: Description from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene283 biogeco2 v2.0 403
AutoFact: protein alfin-like 3 [Arabidopsis thaliana] emb|CAB87196.1| nucleic acid binding protein-like [Arabidopsis thaliana] gb|AAL32929.1| nucleic acid binding protein-like [Arabidopsis thaliana] gb|AAM47893.1| nucleic acid binding protein-like [Arabidopsis thal 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
C-terminus
biog2_v2.0_unigene413 biogeco2 v2.0 1088
AutoFact: AT-hook DNA-binding protein [Gossypium hirsutum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Putative Complete
biog2_v2.0_unigene1193 biogeco2 v2.0 323
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: dna binding 0.0
Internal
biog2_v2.0_unigene1286 biogeco2 v2.0 1151
AutoFact: DUF3594 multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Complete
biog2_v2.0_unigene3340 biogeco2 v2.0 937
AutoFact: duplicated SANT DNA-binding domain-containing protein [Arabidopsis thaliana] dbj|BAB10001.1| unnamed protein product [Arabidopsis thaliana] gb|AAL59913.1| unknown protein [Arabidopsis thaliana] gb|AAM20221.1| unknown protein [Arabidopsis thaliana] gb|AAS1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Putative Complete
biog2_v2.0_unigene3412 biogeco2 v2.0 461
AutoFact: pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain 2.0e-05
Blast2go: dna binding 0.0
Putative coding
biog2_v2.0_unigene4808 biogeco2 v2.0 333
AutoFact: zf-BED domain containing protein 2.0e-06
FL-Next: tr=DNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: dna binding 9.42437e-09
N-terminus
biog2_v2.0_unigene5020 biogeco2 v2.0 676
AutoFact: putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb|EAZ07603.1| hypothetical protein OsI_29854 [Oryza sativa Indica Group] 5.60519e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
N-terminus
biog2_v2.0_unigene5619 biogeco2 v2.0 513
AutoFact: putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb|EAZ07603.1| hypothetical protein OsI_29854 [Oryza sativa Indica Group] 5.60519e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
C-terminus
biog2_v2.0_unigene7150 biogeco2 v2.0 692
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: dna binding 0.0
Internal
biog2_v2.0_unigene8669 biogeco2 v2.0 365
AutoFact: abscisic acid responsive element-binding protein 2 [Populus suaveolens] 9.0e-35
Blast2go: dna binding 0.0
unknown
biog2_v2.0_unigene8809 biogeco2 v2.0 623
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: dna binding 0.0
Putative N-terminus
biog2_v2.0_unigene9029 biogeco2 v2.0 313
AutoFact: putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb|EAZ07603.1| hypothetical protein OsI_29854 [Oryza sativa Indica Group] 5.60519e-45
Blast2go: dna binding 0.0
unknown
biog2_v2.0_unigene9167 biogeco2 v2.0 533
AutoFact: Unassigned protein
Blast2go: dna binding 1.53873e-24
Putative coding
biog2_v2.0_unigene9265 biogeco2 v2.0 1388
AutoFact: PHD finger/nucleic acid binding protein [Olimarabidopsis pumila] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Complete
biog2_v2.0_unigene9487 biogeco2 v2.0 539
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
C-terminus
biog2_v2.0_unigene9539 biogeco2 v2.0 411
AutoFact: MYB transcription factor [Hevea brasiliensis] 0.0
Blast2go: dna binding 0.0
unknown
biog2_v2.0_unigene9778 biogeco2 v2.0 292
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SH81_RICCO 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 8.65302e-42
C-terminus
biog2_v2.0_unigene10164 biogeco2 v2.0 523
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T3Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Internal
biog2_v2.0_unigene11251 biogeco2 v2.0 528
AutoFact: Unassigned protein
Blast2go: dna binding 0.0
Putative coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain