Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: dna binding

Source: Description from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene11620 biogeco2 v2.0 419
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9STX4_RICCO 0.0
Blast2go: dna binding 0.0
unknown
biog2_v2.0_unigene11991 biogeco2 v2.0 1202
AutoFact: PHD finger/nucleic acid binding protein [Olimarabidopsis pumila] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Complete
biog2_v2.0_unigene12573 biogeco2 v2.0 432
AutoFact: Helix-loop-helix protein 1A n=1 Tax=Pinus taeda RepID=Q9SQ79_PINTA 0.0
FL-Next: tr=Helix-loop-helix protein 1A; Pinus taeda (Loblolly pine). 0.0
Blast2go: dna binding 0.0
Internal
biog2_v2.0_unigene12864 biogeco2 v2.0 453
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDQ4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
C-terminus
biog2_v2.0_unigene13464 biogeco2 v2.0 368
AutoFact: sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gb|AAM13041.1| unknown protein [Arabidopsis thaliana] gb|AAO30091.1| unknown protein [Arabidopsis thaliana] gb|AEE76088.1| sequence-specific DNA binding transcription factor [Arabid 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
N-terminus
biog2_v2.0_unigene13719 biogeco2 v2.0 550
AutoFact: putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb|EAZ07603.1| hypothetical protein OsI_29854 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
C-terminus
biog2_v2.0_unigene13780 biogeco2 v2.0 181
AutoFact: abscisic acid responsive element-binding protein 2 [Populus suaveolens] 9.0e-35
Blast2go: dna binding 0.0
unknown
biog2_v2.0_unigene13796 biogeco2 v2.0 329
AutoFact: MYB transcription factor [Hevea brasiliensis] 0.0
Blast2go: dna binding 0.0
unknown
biog2_v2.0_unigene13868 biogeco2 v2.0 429
AutoFact: Myc2 bHLH protein n=2 Tax=Vitis vinifera RepID=A6NAB4_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Internal
biog2_v2.0_unigene14093 biogeco2 v2.0 106
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T3Y0_RICCO 0.0
Blast2go: dna binding 0.0
unknown
biog2_v2.0_unigene14269 biogeco2 v2.0 152
AutoFact: putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb|EAZ07603.1| hypothetical protein OsI_29854 [Oryza sativa Indica Group] 5.60519e-45
Blast2go: dna binding 0.0
unknown
biog2_v2.0_unigene14620 biogeco2 v2.0 504
AutoFact: AT-hook DNA-binding protein [Gossypium hirsutum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Putative N-terminus
biog2_v2.0_unigene15232 biogeco2 v2.0 336
AutoFact: sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gb|AAM13041.1| unknown protein [Arabidopsis thaliana] gb|AAO30091.1| unknown protein [Arabidopsis thaliana] gb|AEE76088.1| sequence-specific DNA binding transcription factor [Arabid 0.0
Blast2go: dna binding 0.0
Coding
biog2_v2.0_unigene15525 biogeco2 v2.0 282
AutoFact: duplicated SANT DNA-binding domain-containing protein [Arabidopsis thaliana] dbj|BAB10001.1| unnamed protein product [Arabidopsis thaliana] gb|AAL59913.1| unknown protein [Arabidopsis thaliana] gb|AAM20221.1| unknown protein [Arabidopsis thaliana] gb|AAS1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Putative N-terminus
biog2_v2.0_unigene16368 biogeco2 v2.0 439
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=DNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: dna binding 0.0
Internal
biog2_v2.0_unigene16696 biogeco2 v2.0 1343
AutoFact: DUF3594 multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Complete
biog2_v2.0_unigene18069 biogeco2 v2.0 142
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T3Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Internal
biog2_v2.0_unigene18261 biogeco2 v2.0 366
AutoFact: pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain 2.0e-05
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: dna binding 0.0
Internal
biog2_v2.0_unigene18662 biogeco2 v2.0 612
AutoFact: protein alfin-like 3 [Arabidopsis thaliana] emb|CAB87196.1| nucleic acid binding protein-like [Arabidopsis thaliana] gb|AAL32929.1| nucleic acid binding protein-like [Arabidopsis thaliana] gb|AAM47893.1| nucleic acid binding protein-like [Arabidopsis thal 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
N-terminus
biog2_v2.0_unigene18736 biogeco2 v2.0 495
AutoFact: DUF659 domain containing protein 0.0
Blast2go: dna binding 0.0
Coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain