Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: DNA mediated transformation

Term: GO:0009294  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene1181 biogeco2 v2.0 558
AutoFact: Histone deacetylase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TG19_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
N-terminus
biog2_v2.0_unigene3189 biogeco2 v2.0 838
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Putative Complete
biog2_v2.0_unigene3942 biogeco2 v2.0 1770
AutoFact: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGL2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: global transcription factor group e4 0.0
Putative Complete
biog2_v2.0_unigene5110 biogeco2 v2.0 2030
AutoFact: Cellulose synthase-like A1 n=2 Tax=Pinaceae RepID=A3QT94_PINTA 0.0
FL-Next: tr=Cellulose synthase-like A1; Pinus taeda (Loblolly pine). 0.0
Blast2go: glucomannan 4-beta-mannosyltransferase 9-like 0.0
C-terminus
biog2_v2.0_unigene8080 biogeco2 v2.0 248
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
biog2_v2.0_unigene8566 biogeco2 v2.0 661
AutoFact: Histone deacetylase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TG19_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
Putative N-terminus
biog2_v2.0_unigene8973 biogeco2 v2.0 728
AutoFact: SET domain-containing protein (Fragment) n=2 Tax=Populus trichocarpa RepID=B9HSV4_POPTR 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone-lysine n- h3 lysine-9 specific suvh9 5.13925e-32
C-terminus
biog2_v2.0_unigene9862 biogeco2 v2.0 432
AutoFact: Cellulose synthase-like A2 n=1 Tax=Pinus taeda RepID=A3QT95_PINTA 0.0
FL-Next: tr=Cellulose synthase-like A2; Pinus taeda (Loblolly pine). 0.0
Blast2go: glucomannan 4-beta-mannosyltransferase 9-like 0.0
Internal
biog2_v2.0_unigene10563 biogeco2 v2.0 479
AutoFact: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGL2_RICCO 0.0
Blast2go: global transcription factor group e4 0.0
Putative coding
biog2_v2.0_unigene10780 biogeco2 v2.0 388
AutoFact: Elongator complex protein 3 n=16 Tax=Magnoliophyta RepID=ELP3_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone acetyltransferase 0.0
Internal
biog2_v2.0_unigene11647 biogeco2 v2.0 477
AutoFact: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGL2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: global transcription factor group e4 0.0
Internal
biog2_v2.0_unigene11998 biogeco2 v2.0 143
AutoFact: Nucleosome assembly protein family n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TVZ4_PHYPA 0.0
Blast2go: nucleosome assembly protein 1 2 0.0
unknown
biog2_v2.0_unigene12348 biogeco2 v2.0 444
AutoFact: Cellulose synthase-like A1 n=2 Tax=Pinaceae RepID=A3QT94_PINTA 0.0
Blast2go: glucomannan 4-beta-mannosyltransferase 9-like 0.0
unknown
biog2_v2.0_unigene12714 biogeco2 v2.0 254
AutoFact: Cellulose synthase-like A2 n=1 Tax=Pinus taeda RepID=A3QT95_PINTA 0.0
FL-Next: tr=Cellulose synthase-like A2; Pinus taeda (Loblolly pine). 0.0
Blast2go: glucomannan 4-beta-mannosyltransferase 9-like 0.0
Internal
biog2_v2.0_unigene14074 biogeco2 v2.0 115
AutoFact: Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI 0.0
Blast2go: histone deacetylase 0.0
unknown
biog2_v2.0_unigene14442 biogeco2 v2.0 328
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Coding
biog2_v2.0_unigene14705 biogeco2 v2.0 339
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
biog2_v2.0_unigene15371 biogeco2 v2.0 606
AutoFact: Histone deacetylase RPD3/HDA1 class II n=3 Tax=Triticeae RepID=C1IC96_HORVU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 15-like 0.0
C-terminus
biog2_v2.0_unigene15618 biogeco2 v2.0 377
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
biog2_v2.0_unigene15632 biogeco2 v2.0 304
AutoFact: Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9MYK9_POPTR 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: swi snf-related matrix-associated actin-dependent regulator of chromatin subfamily a member 3-like 2-like 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain