Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: regulation of transcription from RNA polymerase II promoter

Term: GO:0006357  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene515 biogeco2 v2.0 427
• AutoFact: RNA polymerase II mediator complex subunit, putative n=1 Tax=Ricinus communis RepID=B9RQ93_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna polymerase transcriptional regulation mediator-like protein 0.0
C-terminus
biog2_v2.0_unigene1997 biogeco2 v2.0 333
• AutoFact: elongator complex protein 4 [Arabidopsis thaliana] gb|AAG50962.1|AC073395_4 hypothetical protein; 53156-50996 [Arabidopsis thaliana] gb|AEE75015.1| elongator complex protein 4 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: elongator complex protein 4 0.0
Internal
biog2_v2.0_unigene6042 biogeco2 v2.0 676
• AutoFact: putative elongation factor [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription elongation factor s- 0.0
C-terminus
biog2_v2.0_unigene7186 biogeco2 v2.0 698
• AutoFact: Mediator complex, subunit Med10 [Arabidopsis thaliana] gb|AAK49628.1|AF372912_1 At1g26660/T24P13_4 [Arabidopsis thaliana] gb|AAL15363.1| At1g26660/T24P13_4 [Arabidopsis thaliana] gb|AEE30718.1| Mediator complex, subunit Med10 [Arabidopsis thaliana] 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: mediator subunit med10 0.0
N-terminus
biog2_v2.0_unigene8219 biogeco2 v2.0 487
• AutoFact: RNA polymerase II transcription mediator [Arabidopsis thaliana] gb|AAF04900.1|AC011437_15 hypothetical protein [Arabidopsis thaliana] gb|AAM09647.1|AF466359_1 SWP1 [Arabidopsis thaliana] emb|CAD53582.1| struwwelpeter 1 protein [Arabidopsis thaliana] gb|AE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna polymerase ii transcription mediator 0.0
Putative Complete
biog2_v2.0_unigene8385 biogeco2 v2.0 258
• AutoFact: transcription co-activator-like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Cofactor required for Sp1 transcriptional activation subunit, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: mediator subunit med7 0.0
C-terminus
biog2_v2.0_unigene9098 biogeco2 v2.0 540
• AutoFact: Hydroxyproline-rich glycoprotein family protein n=3 Tax=Arabidopsis RepID=Q9LZ00_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: hydroxyproline-rich glycoprotein family protein 0.0
Internal
biog2_v2.0_unigene11338 biogeco2 v2.0 391
• AutoFact: hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] emb|CAB86039.1| putative protein [Arabidopsis thaliana] gb|AED90527.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] 6.0e-05
• Blast2go: uncharacterized protein loc100812941 1.68156e-44
unknown
biog2_v2.0_unigene13236 biogeco2 v2.0 630
• AutoFact: putative elongation factor [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription elongation factor s- 0.0
Putative N-terminus
biog2_v2.0_unigene15471 biogeco2 v2.0 398
• AutoFact: hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] emb|CAB86039.1| putative protein [Arabidopsis thaliana] gb|AED90527.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] 6.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: uncharacterized protein loc100812941 1.68156e-44
Putative C-terminus
biog2_v2.0_unigene16521 biogeco2 v2.0 99
• AutoFact: Unassigned protein
• Blast2go: uncharacterized protein 0.0
unknown
biog2_v2.0_unigene18172 biogeco2 v2.0 75
• AutoFact: RNA polymerase II mediator complex subunit, putative n=1 Tax=Ricinus communis RepID=B9RQ93_RICCO 0.0
• Blast2go: rna polymerase transcriptional regulation mediator-like protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain