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Assembly Name: biogeco2 v2.0

Name: nuclear speck

Term: GO:0016607  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene1524 biogeco2 v2.0 512
AutoFact: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Arabidopsis thaliana] sp|O22212.1|PRP4_ARATH RecName: Full=U4/U6 small nuclear ribonucleoprotein PRP4-like protein; AltName: Full=Protein EMBRYO DEFECTIVE 2776 gb|AAB84332.1| putative small nuclear 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u4 u6 small nuclear ribonucleoprotein prp4-like 0.0
Putative N-terminus
biog2_v2.0_unigene1947 biogeco2 v2.0 493
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich-splicing factor rsp40 0.0
C-terminus
biog2_v2.0_unigene2729 biogeco2 v2.0 531
AutoFact: Isoform 2 of Serine/threonine-protein phosphatase 5 n=1 Tax=Solanum lycopersicum RepID=Q84K11-2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine threonine-protein phosphatase 5 0.0
C-terminus
biog2_v2.0_unigene3214 biogeco2 v2.0 541
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SEX4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: light-regulated zinc finger protein 1 0.0
N-terminus
biog2_v2.0_unigene3807 biogeco2 v2.0 530
AutoFact: Isoform 2 of Serine/threonine-protein phosphatase 5 n=1 Tax=Solanum lycopersicum RepID=Q84K11-2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine threonine-protein phosphatase 5 0.0
N-terminus
biog2_v2.0_unigene7442 biogeco2 v2.0 554
AutoFact: U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] ref|NP_849600.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] gb|AAF80219.1|AC025290_8 Contains similarity to an U5 snRNP-specific protein 116 kD from Homo sapiens 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u5 small nuclear ribonucleoprotein component 0.0
C-terminus
biog2_v2.0_unigene7736 biogeco2 v2.0 597
AutoFact: Arsenite-resistance protein, putative n=1 Tax=Ricinus communis RepID=B9S6M6_RICCO 0.0
FL-Next: sp=Serrate RNA effector molecule; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: serrate rna effector molecule-like 0.0
C-terminus
biog2_v2.0_unigene8503 biogeco2 v2.0 510
AutoFact: SC35-like splicing factor 28 [Arabidopsis thaliana] gb|ABE66166.1| 28 kDa SC35-like splicing factor [Arabidopsis thaliana] gb|AED92615.1| SC35-like splicing factor 28 [Arabidopsis thaliana] 8.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing arginine serine-rich 13a 0.0
C-terminus
biog2_v2.0_unigene9841 biogeco2 v2.0 527
AutoFact: RecName: Full=Putative N6-adenosine-methyltransferase MT-A70-like gb|ABD28511.1| MT-A70 [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: n6-adenosine-methyltransferase mt-a70-like protein 0.0
Internal
biog2_v2.0_unigene9927 biogeco2 v2.0 235
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich-splicing factor rsp40-like 0.0
Internal
biog2_v2.0_unigene11634 biogeco2 v2.0 183
AutoFact: Isoform 2 of Serine/threonine-protein phosphatase 5 n=1 Tax=Solanum lycopersicum RepID=Q84K11-2 0.0
Blast2go: serine threonine-protein phosphatase 5 0.0
unknown
biog2_v2.0_unigene13520 biogeco2 v2.0 418
AutoFact: splicing factor [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich-splicing factor rsp31-like 0.0
Putative Complete
biog2_v2.0_unigene13730 biogeco2 v2.0 364
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SEX4_RICCO 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: light-regulated zinc finger protein 1 0.0
Internal
biog2_v2.0_unigene14688 biogeco2 v2.0 422
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SEX4_RICCO 0.0
Blast2go: light-regulated zinc finger protein 1 0.0
unknown
biog2_v2.0_unigene15396 biogeco2 v2.0 394
AutoFact: putative arginine/serine-rich protein [Arabidopsis thaliana] 9.99967e-42
Blast2go: protein arginine serine-rich 45 0.0
unknown
biog2_v2.0_unigene15889 biogeco2 v2.0 316
AutoFact: Isoform 2 of Serine/threonine-protein phosphatase 5 n=1 Tax=Solanum lycopersicum RepID=Q84K11-2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine threonine-protein phosphatase 5 0.0
Internal
biog2_v2.0_unigene16651 biogeco2 v2.0 548
AutoFact: SC35-like splicing factor 28 [Arabidopsis thaliana] gb|ABE66166.1| 28 kDa SC35-like splicing factor [Arabidopsis thaliana] gb|AED92615.1| SC35-like splicing factor 28 [Arabidopsis thaliana] 8.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing arginine serine-rich 13a 0.0
N-terminus
biog2_v2.0_unigene16734 biogeco2 v2.0 386
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich-splicing factor rsp40-like 0.0
Putative N-terminus
biog2_v2.0_unigene17302 biogeco2 v2.0 475
AutoFact: putative arginine/serine-rich protein [Arabidopsis thaliana] 9.99967e-42
Blast2go: protein arginine serine-rich 45 0.0
Coding
biog2_v2.0_unigene17335 biogeco2 v2.0 442
AutoFact: splicing factor SR1B [Arabidopsis thaliana] gb|AEE82170.1| splicing factor SR1B [Arabidopsis thaliana] 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor sr1b 1.49436e-32
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain