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Assembly Name: biogeco2 v2.0

Name: plastid chromosome

Term: GO:0009508  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene518 biogeco2 v2.0 1339
AutoFact: ssDNA-binding transcriptional regulator [Arabidopsis thaliana] gb|AAF43941.1|AC012188_18 Contains similarity to a hypothetical protein from Arabidopsis thaliana gb|AC002521.2. EST gb|AI995686 comes from this gene gb|AAG48815.1|AF332452_1 putative DNA-bind 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ssdna-binding transcriptional regulator 0.0
Complete
biog2_v2.0_unigene2202 biogeco2 v2.0 692
AutoFact: cobW multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: prli-interacting factor 0.0
Internal
biog2_v2.0_unigene2821 biogeco2 v2.0 615
AutoFact: plastid transcriptionally active 18 [Arabidopsis thaliana] gb|AAD15387.1| hypothetical protein [Arabidopsis thaliana] dbj|BAC42256.1| unknown protein [Arabidopsis thaliana] gb|AAO50696.1| unknown protein [Arabidopsis thaliana] gb|AEC08646.1| plastid trans 6.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: like cupin-like protein 0.0
Complete
biog2_v2.0_unigene5028 biogeco2 v2.0 1117
AutoFact: ssDNA-binding transcriptional regulator [Arabidopsis thaliana] gb|AAF43941.1|AC012188_18 Contains similarity to a hypothetical protein from Arabidopsis thaliana gb|AC002521.2. EST gb|AI995686 comes from this gene gb|AAG48815.1|AF332452_1 putative DNA-bind 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ssdna-binding transcriptional regulator 0.0
Complete
biog2_v2.0_unigene5564 biogeco2 v2.0 794
AutoFact: PSI-P; PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding 8.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
biog2_v2.0_unigene7277 biogeco2 v2.0 727
AutoFact: plastid transcriptionally active 4 [Arabidopsis thaliana] sp|O80796.1|IM30_ARATH RecName: Full=Probable membrane-associated 30 kDa protein, chloroplastic; Flags: Precursor gb|AAC27135.1| Similar to chloroplast membrane-associated 30KD protein precursor (I 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene7379 biogeco2 v2.0 980
AutoFact: plastid transcriptionally active 17 protein [Arabidopsis thaliana] gb|AAF27129.1|AC018849_17 hypothetical protein; 58060-60358 [Arabidopsis thaliana] gb|AAT47799.1| At1g80480 [Arabidopsis thaliana] gb|AAU05519.1| At1g80480 [Arabidopsis thaliana] gb|AEE364 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cobw domain-containing protein 2-like isoform 2 0.0
N-terminus
biog2_v2.0_unigene7585 biogeco2 v2.0 407
AutoFact: plastid transcriptionally active 17 protein [Arabidopsis thaliana] gb|AAF27129.1|AC018849_17 hypothetical protein; 58060-60358 [Arabidopsis thaliana] gb|AAT47799.1| At1g80480 [Arabidopsis thaliana] gb|AAU05519.1| At1g80480 [Arabidopsis thaliana] gb|AEE364 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cobw domain-containing protein 2-like isoform 2 0.0
C-terminus
biog2_v2.0_unigene8767 biogeco2 v2.0 306
AutoFact: plastid transcriptionally active 4 [Arabidopsis thaliana] sp|O80796.1|IM30_ARATH RecName: Full=Probable membrane-associated 30 kDa protein, chloroplastic; Flags: Precursor gb|AAC27135.1| Similar to chloroplast membrane-associated 30KD protein precursor (I 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
biog2_v2.0_unigene12610 biogeco2 v2.0 403
AutoFact: putative DNA binding domain containing protein [Oryza sativa Japonica Group] gb|AAP54158.1| SAP domain containing protein, expressed [Oryza sativa Japonica Group] 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: plastid transcriptionally active 3 1.73948e-39
C-terminus
biog2_v2.0_unigene14564 biogeco2 v2.0 251
AutoFact: protein plastid transcriptionally active 16 [Arabidopsis thaliana] emb|CAB51187.1| putative protein [Arabidopsis thaliana] gb|AEE78204.1| protein plastid transcriptionally active 16 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein plastid transcriptionally active 16 0.0
Internal
biog2_v2.0_unigene16278 biogeco2 v2.0 465
AutoFact: genomes uncoupled 1 protein [Arabidopsis thaliana] sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Flags: Precursor gb|AAD26479.1| unknown protein [Arabidopsis thaliana] gb|AEC08542.1| genomes un 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Putative N-terminus
biog2_v2.0_unigene16519 biogeco2 v2.0 168
AutoFact: plastid transcriptionally active 17 protein [Arabidopsis thaliana] gb|AAF27129.1|AC018849_17 hypothetical protein; 58060-60358 [Arabidopsis thaliana] gb|AAT47799.1| At1g80480 [Arabidopsis thaliana] gb|AAU05519.1| At1g80480 [Arabidopsis thaliana] gb|AEE364 0.0
Blast2go: cobw domain-containing protein 2-like isoform 2 0.0
unknown
biog2_v2.0_unigene17527 biogeco2 v2.0 487
AutoFact: plastid transcriptionally active 12 [Arabidopsis thaliana] gb|AEC09002.1| plastid transcriptionally active 12 [Arabidopsis thaliana] 3.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: plastid transcriptionally active 12 4.93397e-42
Putative C-terminus
biog2_v2.0_unigene18551 biogeco2 v2.0 377
AutoFact: plastid transcriptionally active 4 [Arabidopsis thaliana] sp|O80796.1|IM30_ARATH RecName: Full=Probable membrane-associated 30 kDa protein, chloroplastic; Flags: Precursor gb|AAC27135.1| Similar to chloroplast membrane-associated 30KD protein precursor (I 0.0
Blast2go: protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain