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Assembly Name: biogeco2 v2.0

Name: nucleoplasm

Term: GO:0005654  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene1223 biogeco2 v2.0 712
AutoFact: actin-related protein 5 [Arabidopsis thaliana] sp|Q940Z2.2|ARP5_ARATH RecName: Full=Actin-related protein 5 dbj|BAB03145.1| actin-like protein [Arabidopsis thaliana] gb|ACV53017.1| actin-related protein 5 [Arabidopsis thaliana] gb|ACV53018.1| actin-relate 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: actin-related protein 5 0.0
Putative N-terminus
biog2_v2.0_unigene3094 biogeco2 v2.0 635
AutoFact: Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin fusion protein 0.0
Complete
biog2_v2.0_unigene4867 biogeco2 v2.0 751
AutoFact: protein ZEU1 (ZEUS1) [Arabidopsis thaliana] gb|AED97190.1| protein ZEU1 (ZEUS1) [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: thymidylate kinase 0.0
C-terminus
biog2_v2.0_unigene5396 biogeco2 v2.0 514
AutoFact: Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin a-52 residue ribosomal protein fusion product 1 0.0
Complete
biog2_v2.0_unigene5615 biogeco2 v2.0 488
AutoFact: Histone H4 n=7 Tax=Neoptera RepID=E0VXR9_PEDHC 2.0e-38
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: histone h4 0.0
Complete
biog2_v2.0_unigene5904 biogeco2 v2.0 811
AutoFact: PREDICTED: similar to Late histone H2A.2.2 n=2 Tax=Hydra magnipapillata RepID=UPI0001924B8D 3.0e-38
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: histone h4 0.0
Complete
biog2_v2.0_unigene5974 biogeco2 v2.0 799
AutoFact: histone H4 [Hyacinthus orientalis] 4.0e-38
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: histone h4 0.0
Complete
biog2_v2.0_unigene6426 biogeco2 v2.0 399
AutoFact: Ubiquitin n=2 Tax=Dictyosteliida RepID=D3AVZ4_POLPA 1.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin-like protein 8.40779e-45
N-terminus
biog2_v2.0_unigene7998 biogeco2 v2.0 571
AutoFact: asymmetric leaves 2 [Carica papaya] 0.0
Blast2go: lob domain-containing protein 6 0.0
unknown
biog2_v2.0_unigene8401 biogeco2 v2.0 287
AutoFact: partner of Y14-mago [Arabidopsis thaliana] ref|NP_849639.1| partner of Y14-mago [Arabidopsis thaliana] ref|NP_001031023.1| partner of Y14-mago [Arabidopsis thaliana] gb|AAF16626.1|AC011661_4 T23J18.7 [Arabidopsis thaliana] gb|AAO42233.1| unknown protein [ 9.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: partner of y14-mago 0.0
Putative C-terminus
biog2_v2.0_unigene8416 biogeco2 v2.0 627
AutoFact: La protein 1 [Arabidopsis thaliana] gb|AAL07086.1| unknown protein [Arabidopsis thaliana] gb|AEE86109.1| La protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: la protein 1 0.0
Internal
biog2_v2.0_unigene13510 biogeco2 v2.0 401
AutoFact: Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SKY7_PHYPA 3.0e-29
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: single-strand selective monofunctional uracil dna glycosylase 2.73164e-35
Internal
biog2_v2.0_unigene14033 biogeco2 v2.0 149
AutoFact: MAP7 multi-domain protein 2.0e-06
Blast2go: branched-chain-amino-acid aminotransferase 5 1.35097e-25
unknown
biog2_v2.0_unigene15023 biogeco2 v2.0 221
AutoFact: asymmetric leaves 2 [Carica papaya] 0.0
Blast2go: lob domain-containing protein 6 0.0
unknown
biog2_v2.0_unigene15816 biogeco2 v2.0 420
AutoFact: putative fanconi anemia, complementation group D2 [Oryza sativa Japonica Group] 6.0e-13
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: low quality protein: fanconi anemia group d2 7.68529e-18
Internal
biog2_v2.0_unigene17339 biogeco2 v2.0 213
AutoFact: protein ZEU1 (ZEUS1) [Arabidopsis thaliana] gb|AED97190.1| protein ZEU1 (ZEUS1) [Arabidopsis thaliana] 0.0
Blast2go: thymidylate kinase 0.0
unknown
biog2_v2.0_unigene18426 biogeco2 v2.0 80
AutoFact: Asymmetric leaves 2 n=1 Tax=Carica papaya RepID=A7L4B2_CARPA 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene19045 biogeco2 v2.0 461
AutoFact: Histone H3 n=2 Tax=Pediculus humanus corporis RepID=E0V960_PEDHC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone h3 0.0
Putative Complete
biog2_v2.0_unigene19047 biogeco2 v2.0 563
AutoFact: histone H4 [Hyacinthus orientalis] 2.0e-38
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: histone h4 0.0
C-terminus
biog2_v2.0_unigene19934 biogeco2 v2.0 477
AutoFact: Ubiquitin family protein n=3 Tax=Tetrahymena thermophila RepID=UPI00006CC966 0.0
FL-Next: sp=Ubiquitin; Avena sativa (Oat). 0.0
Blast2go: polyubiquitin 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain