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Assembly Name: biogeco2 v2.0

Name: cytoplasmic part

Term: GO:0044444  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene1533 biogeco2 v2.0 425
AutoFact: Protein phosphatase 1 regulatory subunit inhibitor-3 n=1 Tax=Vicia faba RepID=C4B4E6_VICFA 6.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein phosphatase 1 regulatory subunit inhibitor-3 0.0
N-terminus
biog2_v2.0_unigene2219 biogeco2 v2.0 346
AutoFact: 3-hydroxyisobutyryl-CoA hydrolase 1 [Arabidopsis thaliana] sp|Q9LKJ1.1|HIBC1_ARATH RecName: Full=3-hydroxyisobutyryl-CoA hydrolase 1; AltName: Full=CoA-thioester hydrolase CHY1 gb|AAF77193.1|AF276301_1 CoA-thioester hydrolase CHY1 [Arabidopsis thaliana] d 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 3-hydroxyisobutyryl-coenzyme a expressed 0.0
Internal
biog2_v2.0_unigene2574 biogeco2 v2.0 1508
AutoFact: cis-prenyltransferase, dehydrodolichyl diphosphate synthase [Arabidopsis thaliana] gb|AAN72032.1| Unknown protein [Arabidopsis thaliana] gb|AEE28780.1| cis-prenyltransferase, dehydrodolichyl diphosphate synthase [Arabidopsis thaliana] 9.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nogo-b receptor-like 0.0
Complete
biog2_v2.0_unigene3014 biogeco2 v2.0 1183
AutoFact: GTP-binding protein SAR1A n=5 Tax=Embryophyta RepID=B4FPT6_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gtp-binding protein sar1a 0.0
Complete
biog2_v2.0_unigene4190 biogeco2 v2.0 507
AutoFact: SAP domain-containing protein [Arabidopsis thaliana] ref|NP_001078515.1| SAP domain-containing protein [Arabidopsis thaliana] emb|CAA18754.1| putative protein [Arabidopsis thaliana] emb|CAB80631.1| putative protein [Arabidopsis thaliana] gb|AEE87103.1| SA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: sap domain-containing protein 0.0
C-terminus
biog2_v2.0_unigene4248 biogeco2 v2.0 156
AutoFact: Ribosomal protein S4 n=1 Tax=Cycas taitungensis RepID=B0BLG9_CYCTA 0.0
Blast2go: ribosomal protein s4 0.0
unknown
biog2_v2.0_unigene4289 biogeco2 v2.0 2894
AutoFact: Luminal binding protein n=3 Tax=Pinaceae RepID=Q40924_PSEMZ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: luminal binding protein 0.0
Complete
biog2_v2.0_unigene5219 biogeco2 v2.0 518
AutoFact: Ribosomal protein L39e, putative n=1 Tax=Ricinus communis RepID=B9SC04_RICCO 7.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l39 1.1178e-29
Complete
biog2_v2.0_unigene5467 biogeco2 v2.0 621
AutoFact: 50S ribosomal protein L33 n=2 Tax=Picea sitchensis RepID=A9NLY6_PICSI 7.0e-24
FL-Next: sp=50S ribosomal protein L33; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 50s ribosomal protein l33 5.71806e-30
Complete
biog2_v2.0_unigene5549 biogeco2 v2.0 824
AutoFact: Ribosomal protein S13, mitochondrial n=14 Tax=Magnoliophyta RepID=RT13_DAUCA 3.99931e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal protein s13 5.00264e-43
Putative Complete
biog2_v2.0_unigene6002 biogeco2 v2.0 1360
AutoFact: GTP-binding protein SAR1A n=5 Tax=Embryophyta RepID=B4FPT6_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gtp-binding protein sar1a 0.0
Complete
biog2_v2.0_unigene6307 biogeco2 v2.0 1188
AutoFact: ADP-ribosylation factor [Medicago sativa] emb|CAI29265.1| ADP-ribosylation factor 1 [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: adp-ribosylation factor 0.0
Complete
biog2_v2.0_unigene7007 biogeco2 v2.0 917
AutoFact: Nuclear matrix constituent-like protein 1 n=1 Tax=Cucumis melo subsp. melo RepID=E5GCT1_CUCME 8.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear matrix constituent protein 1-like 1.51165e-30
Putative Complete
biog2_v2.0_unigene8571 biogeco2 v2.0 404
AutoFact: ribosomal protein L34e-like protein [Arabidopsis thaliana] gb|AAS76274.1| At3g01170 [Arabidopsis thaliana] dbj|BAD43016.1| unknown protein [Arabidopsis thaliana] dbj|BAF01163.1| hypothetical protein [Arabidopsis thaliana] gb|AEE73619.1| ribosomal protein 6.0e-30
Blast2go: 60s ribosomal protein 0.0
unknown
biog2_v2.0_unigene9119 biogeco2 v2.0 54
AutoFact: Pentatricopeptide repeat-containing protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GB98_CUCME 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
unknown
biog2_v2.0_unigene9833 biogeco2 v2.0 437
AutoFact: Protein regulator of cytokinesis, putative n=1 Tax=Ricinus communis RepID=B9RHR0_RICCO 0.0
Blast2go: 65-kda microtubule-associated protein 3-like 0.0
unknown
biog2_v2.0_unigene10273 biogeco2 v2.0 490
AutoFact: Probable galacturonosyltransferase 7 n=2 Tax=Arabidopsis RepID=GAUT7_ARATH 2.0e-22
FL-Next: sp=Probable galacturonosyltransferase 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: alpha- -galacturonosyltransferase 3.64835e-26
Internal
biog2_v2.0_unigene10848 biogeco2 v2.0 345
AutoFact: PREDICTED: similar to synaptotagmin binding, cytoplasmic RNA interacting protein, isoform 1 [Ornithorhynchus anatinus] 3.0e-31
FL-Next: tr=Putative uncharacterized protein Sb08g019140; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein q 0.0
Internal
biog2_v2.0_unigene10949 biogeco2 v2.0 240
AutoFact: Isoform 4 of Fibroblast growth factor receptor 3 n=2 Tax=Homo sapiens RepID=P22607-4 6.0e-22
Blast2go: fibroblast growth factor receptor 3 1.03227e-27
Coding
biog2_v2.0_unigene11146 biogeco2 v2.0 469
AutoFact: PREDICTED: similar to synaptotagmin binding, cytoplasmic RNA interacting protein, isoform 1 [Ornithorhynchus anatinus] 3.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein q 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain