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Assembly Name: biogeco2 v2.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene11996 biogeco2 v2.0 432
AutoFact: putative RNA binding ribonucleoprotein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Expressed protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna recognition motif-containing protein 0.0
N-terminus
biog2_v2.0_unigene12005 biogeco2 v2.0 684
AutoFact: Homeodomain-like; Uridylate kinase [Medicago truncatula] 6.0e-28
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: uridylate kinase 7.33348e-30
C-terminus
biog2_v2.0_unigene12170 biogeco2 v2.0 420
AutoFact: protein trichome birefringence-like 5 [Arabidopsis thaliana] gb|AED92864.1| protein trichome birefringence-like 5 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein trichome birefringence-like 5 0.0
Internal
biog2_v2.0_unigene12422 biogeco2 v2.0 238
AutoFact: RNA-binding protein-like [Oryza sativa Japonica Group] gb|EEE69405.1| hypothetical protein OsJ_28765 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=RanBP2-type zinc finger protein At1g67325; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna binding 0.0
Internal
biog2_v2.0_unigene12563 biogeco2 v2.0 533
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein rrp5 homolog 0.0
C-terminus
biog2_v2.0_unigene12887 biogeco2 v2.0 423
AutoFact: ATP-binding cassette transporter n=1 Tax=Selaginella moellendorffii RepID=D8T797_SELML 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-binding cassette transporter 0.0
C-terminus
biog2_v2.0_unigene12968 biogeco2 v2.0 539
AutoFact: adenosine-deaminase family/editase family protein [Arabidopsis thaliana] 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: adenosine trna-specific 1 2.67521e-28
Internal
biog2_v2.0_unigene13048 biogeco2 v2.0 500
AutoFact: mRNA cap guanine-N7 methyltransferase n=1 Tax=Picea sitchensis RepID=C0PS33_PICSI 0.0
FL-Next: sp=mRNA cap guanine-N7 methyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mrna cap guanine-n7 methyltransferase 1 0.0
N-terminus
biog2_v2.0_unigene13177 biogeco2 v2.0 673
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein 0.0
N-terminus
biog2_v2.0_unigene13297 biogeco2 v2.0 132
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rna binding 0.0
Internal
biog2_v2.0_unigene13559 biogeco2 v2.0 410
AutoFact: Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3 exoribonuclease [Medicago truncatula] 0.0
Blast2go: exosome complex component rrp46 0.0
unknown
biog2_v2.0_unigene13636 biogeco2 v2.0 310
AutoFact: RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subun 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene13699 biogeco2 v2.0 269
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9T0X5_RICCO 0.0
FL-Next: sp=Putative DEAD-box ATP-dependent RNA helicase 29; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dead-box atp-dependent rna helicase 29-like 0.0
Internal
biog2_v2.0_unigene13859 biogeco2 v2.0 471
AutoFact: splicing factor 3B subunit 4 [Arabidopsis thaliana] gb|AAD12222.1| putative spliceosome associated protein [Arabidopsis thaliana] gb|AAN12991.1| putative spliceosome-associated protein [Arabidopsis thaliana] gb|AEC06776.1| splicing factor 3B subunit 4 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b subunit 4-like 0.0
Internal
biog2_v2.0_unigene13963 biogeco2 v2.0 345
AutoFact: Transmembrane protein TPARL, putative n=1 Tax=Ricinus communis RepID=B9RWP5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein 0.0
C-terminus
biog2_v2.0_unigene14084 biogeco2 v2.0 664
AutoFact: putative partner of Nob1 [Oryza sativa Japonica Group] dbj|BAB90119.1| putative partner of Nob1 [Oryza sativa Japonica Group] gb|EEE55513.1| hypothetical protein OsJ_03725 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: partner of nob1 0.0
N-terminus
biog2_v2.0_unigene14361 biogeco2 v2.0 180
AutoFact: pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family 7.0e-10
Blast2go: trna (cytosine -c )-methyltransferase-like 0.0
unknown
biog2_v2.0_unigene14543 biogeco2 v2.0 422
AutoFact: smad nuclear-interacting protein 1 [Arabidopsis thaliana] sp|Q8W4D8.1|DDL_ARATH RecName: Full=FHA domain-containing protein DDL; AltName: Full=Protein DAWDLE gb|AAL32704.1| Unknown protein [Arabidopsis thaliana] gb|AAN15324.1| Unknown protein [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: fha domain-containing protein ddl 0.0
C-terminus
biog2_v2.0_unigene14723 biogeco2 v2.0 267
AutoFact: RNA-binding KH domain-containing protein [Arabidopsis thaliana] gb|AAL32764.1| RNA-binding protein-like [Arabidopsis thaliana] gb|AAP37761.1| At5g53060 [Arabidopsis thaliana] gb|AED96298.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: kh domain-containing protein at4g18375-like 0.0
C-terminus
biog2_v2.0_unigene15024 biogeco2 v2.0 366
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 3.35577e-30
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain