Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene10028 biogeco2 v2.0 366
AutoFact: mRNA cap guanine-N7 methyltransferase n=1 Tax=Picea sitchensis RepID=C0PS33_PICSI 0.0
Blast2go: mrna cap guanine-n7 methyltransferase 1 0.0
unknown
biog2_v2.0_unigene10169 biogeco2 v2.0 416
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 5.0e-08
Blast2go: ctc-interacting domain 11 protein 0.0
unknown
biog2_v2.0_unigene10196 biogeco2 v2.0 358
AutoFact: RNA-binding KH domain-containing protein [Arabidopsis thaliana] gb|AAL32764.1| RNA-binding protein-like [Arabidopsis thaliana] gb|AAP37761.1| At5g53060 [Arabidopsis thaliana] gb|AED96298.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: kh domain-containing protein at4g18375-like 0.0
Internal
biog2_v2.0_unigene10279 biogeco2 v2.0 671
AutoFact: pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family 7.0e-10
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: trna (cytosine -c )-methyltransferase-like 0.0
Internal
biog2_v2.0_unigene10312 biogeco2 v2.0 386
AutoFact: cyclophilin 59 [Arabidopsis thaliana] gb|AAS75309.1| multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gb|AEE32989.1| cyclophilin 59 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: peptidyl-prolyl cis-trans isomerase-like 4-like 0.0
Putative C-terminus
biog2_v2.0_unigene10382 biogeco2 v2.0 343
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 5.0e-30
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 3.90336e-34
unknown
biog2_v2.0_unigene10409 biogeco2 v2.0 587
AutoFact: exosome complex exonuclease DIS3/RRP44 [Arabidopsis thaliana] gb|AAL09713.1| At2g17510/MJB20.7 [Arabidopsis thaliana] gb|AAL90959.1| At2g17510/MJB20.7 [Arabidopsis thaliana] gb|AAD32908.2| putative mitotic control protein dis3 [Arabidopsis thaliana] gb|AE 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: exosome complex exonuclease dis3 rrp44 0.0
Internal
biog2_v2.0_unigene10460 biogeco2 v2.0 294
AutoFact: Ribonucleoside-diphosphate reductase n=1 Tax=Musa acuminata RepID=Q6RZW3_MUSAC 0.0
Blast2go: ribonucleoside-diphosphate reductase large subunit 0.0
unknown
biog2_v2.0_unigene10811 biogeco2 v2.0 453
AutoFact: RNA pseudourine synthase 1 n=1 Tax=Arabidopsis thaliana RepID=PUS1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna pseudourine synthase 1-like 0.0
Internal
biog2_v2.0_unigene11226 biogeco2 v2.0 347
AutoFact: prephenate dehydratase [Ipomoea trifida] dbj|BAF37790.1| hypothetical protein [Ipomoea trifida] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene11301 biogeco2 v2.0 371
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein binding 0.0
C-terminus
biog2_v2.0_unigene11346 biogeco2 v2.0 461
AutoFact: RNA-binding protein-like [Oryza sativa Japonica Group] gb|EEE69405.1| hypothetical protein OsJ_28765 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Internal
biog2_v2.0_unigene11366 biogeco2 v2.0 441
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
FL-Next: sp=Putative pumilio homolog 7, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene11435 biogeco2 v2.0 263
AutoFact: Ribonucleoside-diphosphate reductase n=1 Tax=Musa acuminata RepID=Q6RZW3_MUSAC 0.0
Blast2go: ribonucleoside-diphosphate reductase large subunit 0.0
unknown
biog2_v2.0_unigene11653 biogeco2 v2.0 353
AutoFact: Putative RNA-binding protein n=1 Tax=Solanum lycopersicum RepID=B1N661_SOLLC 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 40; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: zinc finger ccch domain-containing protein 40-like 0.0
Internal
biog2_v2.0_unigene11764 biogeco2 v2.0 195
AutoFact: Putative RNA-binding protein n=1 Tax=Solanum lycopersicum RepID=B1N661_SOLLC 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 40; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: zinc finger ccch domain-containing protein 40-like 0.0
N-terminus
biog2_v2.0_unigene11840 biogeco2 v2.0 328
AutoFact: CRS1_YhbY domain containing protein 1.0e-18
FL-Next: sp=CRS2-associated factor 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: crs2-associated factor mitochondrial-like 0.0
Internal
biog2_v2.0_unigene11869 biogeco2 v2.0 407
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 4.30598e-14
C-terminus
biog2_v2.0_unigene11980 biogeco2 v2.0 267
AutoFact: putative poly(A) polymerase [Oryza sativa Japonica Group] 0.0
Blast2go: nuclear poly polymerase 0.0
unknown
biog2_v2.0_unigene11986 biogeco2 v2.0 291
AutoFact: putative RNA-binding protein RBP37 [Oryza sativa Japonica Group] dbj|BAG24017.1| RNA-binding protein [Oryza sativa Japonica Group] dbj|BAG95850.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE67936.1| hypothetical protein OsJ_25822 [Oryza s 0.0
Blast2go: rna-binding protein rbp37 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain