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Assembly Name: biogeco2 v2.0

Name: chloroplast thylakoid lumen

Term: GO:0009543  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene592 biogeco2 v2.0 746
AutoFact: Electron transporter, putative n=1 Tax=Ricinus communis RepID=B9SPX9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein 0.0
C-terminus
biog2_v2.0_unigene848 biogeco2 v2.0 519
AutoFact: D1 protease-like protein precursor [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: carboxyl-terminal-processing protease 0.0
C-terminus
biog2_v2.0_unigene1518 biogeco2 v2.0 642
AutoFact: Electron transporter, putative n=1 Tax=Ricinus communis RepID=B9SPX9_RICCO 0.0
Blast2go: uncharacterized protein 0.0
unknown
biog2_v2.0_unigene1687 biogeco2 v2.0 487
AutoFact: chloroplast thylakoid lumen protein [Arabidopsis thaliana] sp|O22773.3|TL16_ARATH RecName: Full=Thylakoid lumenal 16.5 kDa protein, chloroplastic; Flags: Precursor gb|AAK63989.1| AT4g02530/T10P11_17 [Arabidopsis thaliana] gb|AAL87390.1| AT4g02530/T10P11_1 3.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chloroplast thylakoid lumen protein 0.0
C-terminus
biog2_v2.0_unigene1976 biogeco2 v2.0 833
AutoFact: Photosystem I reaction center subunit n=1 Tax=Nicotiana tabacum RepID=D2K7Z2_TOBAC 1.96182e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: photosystem i reaction center subunit n 0.0
Complete
biog2_v2.0_unigene2355 biogeco2 v2.0 578
AutoFact: Plastocyanin, chloroplastic n=1 Tax=Spinacia oleracea RepID=PLAS_SPIOL 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: plastocyanin chloroplast 0.0
C-terminus
biog2_v2.0_unigene2770 biogeco2 v2.0 523
AutoFact: Unassigned protein
Blast2go: sdl-1 protein 0.0
unknown
biog2_v2.0_unigene2923 biogeco2 v2.0 829
AutoFact: peptidylprolyl cis-trans isomerase [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: peptidylprolyl cis-trans isomerase 0.0
Putative Complete
biog2_v2.0_unigene2946 biogeco2 v2.0 911
AutoFact: Oxygen-evolving enhancer protein 3-1, chloroplastic n=3 Tax=Arabidopsis RepID=PSBQ1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: oxygen-evolving enhancer protein 3-1 0.0
Putative Complete
biog2_v2.0_unigene6054 biogeco2 v2.0 313
AutoFact: Oxygen-evolving enhancer protein 3-1, chloroplastic n=3 Tax=Arabidopsis RepID=PSBQ1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: oxygen-evolving enhancer protein 3-1 0.0
C-terminus
biog2_v2.0_unigene7962 biogeco2 v2.0 633
AutoFact: FK506 binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8R8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: fk506 binding 0.0
C-terminus
biog2_v2.0_unigene8432 biogeco2 v2.0 719
AutoFact: PsbP domain-containing protein 5 [Arabidopsis thaliana] sp|P82715.3|PPD5_ARATH RecName: Full=PsbP domain-containing protein 5, chloroplastic; AltName: Full=OEC23-like protein 6; AltName: Full=PsbP-related thylakoid lumenal protein 4; AltName: Full=Thylako 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene8760 biogeco2 v2.0 520
AutoFact: Unassigned protein
FL-Next: tr=SDL-1 protein; Nicotiana plumbaginifolia (Leadwort-leaved tobacco) (Tex-Mex tobacco). 0.0
Blast2go: sdl-1 protein 0.0
Internal
biog2_v2.0_unigene10178 biogeco2 v2.0 483
AutoFact: photosystem II protein Psb27 9.99967e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: low psii accumulation 19 protein 0.0
C-terminus
biog2_v2.0_unigene10398 biogeco2 v2.0 471
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: sdl-1 protein 0.0
Putative N-terminus
biog2_v2.0_unigene10572 biogeco2 v2.0 212
AutoFact: Pentapeptide repeat-containing protein [Arabidopsis thaliana] sp|Q8H1Q1.1|TL225_ARATH RecName: Full=Thylakoid lumenal protein At1g12250, chloroplastic; Flags: Precursor gb|AAN13098.1| unknown protein [Arabidopsis thaliana] gb|AEE28857.1| Pentapeptide repe 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentapeptide repeat-containing protein 0.0
N-terminus
biog2_v2.0_unigene10860 biogeco2 v2.0 424
AutoFact: Unassigned protein
FL-Next: tr=N-acetyltransferase, putative; Ricinus communis (Castor bean). 0.0
Blast2go: sdl-1 protein 0.0
Internal
biog2_v2.0_unigene11325 biogeco2 v2.0 204
AutoFact: ascorbate peroxidase 4 [Arabidopsis thaliana] sp|P82281.2|TL29_ARATH RecName: Full=Thylakoid lumenal 29 kDa protein, chloroplastic; Short=TL29; AltName: Full=AtAPx07; AltName: Full=P29; AltName: Full=Probable L-ascorbate peroxidase 4; Flags: Precursor gb| 0.0
Blast2go: ascorbate peroxidase 4 0.0
unknown
biog2_v2.0_unigene11370 biogeco2 v2.0 362
AutoFact: thylakoid lumenal protein [Arabidopsis thaliana] sp|Q9SW33.1|TL1Y_ARATH RecName: Full=Thylakoid lumenal 17.9 kDa protein, chloroplastic; Flags: Precursor emb|CAB36735.1| hypothetical protein [Arabidopsis thaliana] emb|CAB79402.1| hypothetical protein [Ara 2.99878e-43
Blast2go: protein 0.0
Putative coding
biog2_v2.0_unigene12045 biogeco2 v2.0 547
AutoFact: photosystem II stability/assembly factor HCF136 [Arabidopsis thaliana] sp|O82660.1|P2SAF_ARATH RecName: Full=Photosystem II stability/assembly factor HCF136, chloroplastic; Flags: Precursor emb|CAA75723.1| HCF136 protein [Arabidopsis thaliana] dbj|BAB0982 0.0
FL-Next: sp=Photosystem II stability/assembly factor HCF136, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain