Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene969 biogeco2 v2.0 354
AutoFact: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9RN12_RICCO 0.0
Blast2go: membrane associated protein phosphatase 2c 0.0
unknown
biog2_v2.0_unigene1121 biogeco2 v2.0 406
AutoFact: Homeobox protein, putative n=1 Tax=Ricinus communis RepID=B9R943_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: homeobox-leucine zipper protein hat5-like 0.0
C-terminus
biog2_v2.0_unigene1170 biogeco2 v2.0 320
AutoFact: GRAS family transcription factor n=1 Tax=Populus trichocarpa RepID=B9IAQ7_POPTR 0.0
FL-Next: tr=SCARECROW; Pinus sylvestris (Scots pine). 0.0
Blast2go: gras family transcription factor 0.0
Internal
biog2_v2.0_unigene1198 biogeco2 v2.0 494
AutoFact: auxin-responsive protein IAA13 [Arabidopsis thaliana] ref|NP_001118434.1| auxin-responsive protein IAA13 [Arabidopsis thaliana] gb|AAG48763.1|AF332399_1 auxin-regulated protein IAA13 [Arabidopsis thaliana] gb|AAC49054.1| IAA13 [Arabidopsis thaliana] gb|AA 2.0e-10
Blast2go: auxin-responsive protein iaa13 6.91375e-17
unknown
biog2_v2.0_unigene1216 biogeco2 v2.0 727
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 0.0
FL-Next: sp=FACT complex subunit SSRP1; Catharanthus roseus (Madagascar periwinkle) (Vinca rosea). 0.0
Blast2go: fact complex subunit ssrp1 0.0
Internal
biog2_v2.0_unigene1230 biogeco2 v2.0 289
AutoFact: Histone deacetylase (Fragment) n=7 Tax=rosids RepID=D7SM47_VITVI 0.0
FL-Next: sp=Putative histone deacetylase 10; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: histone deacetylase 0.0
C-terminus
biog2_v2.0_unigene1374 biogeco2 v2.0 613
AutoFact: zinc finger CCCH domain-containing protein 20 [Arabidopsis thaliana] sp|O82199.1|C3H20_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 20; Short=AtC3H20 gb|AAC62135.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana] gb|AAM6084 0.0
Blast2go: ccch-type zinc finger protein 0.0
unknown
biog2_v2.0_unigene1381 biogeco2 v2.0 440
AutoFact: Tubby-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPK2_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tubby-like f-box protein 3 0.0
Internal
biog2_v2.0_unigene1384 biogeco2 v2.0 723
AutoFact: NAC domain containing protein 28 [Arabidopsis thaliana] gb|AAF06052.1|AC009513_8 Contains similarity to gb|AF123310 NAC domain protein NAM gene from Arabidopsis thaliana gb|AEE34440.1| NAC domain containing protein 28 [Arabidopsis thaliana] 8.99999e-40
Blast2go: nac domain ipr003441 0.0
Coding
biog2_v2.0_unigene1435 biogeco2 v2.0 616
AutoFact: homeodomain-leucine zipper protein 57 [Glycine max] 5.0e-34
Blast2go: homeobox-leucine zipper protein athb-6-like 2.01282e-38
Coding
biog2_v2.0_unigene1553 biogeco2 v2.0 573
AutoFact: DUF1421 multi-domain protein 9.0e-18
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: zinc finger protein 0.0
C-terminus
biog2_v2.0_unigene1663 biogeco2 v2.0 819
AutoFact: homeodomain-leucine zipper protein 56 [Glycine max] 8.00001e-41
Blast2go: homeobox-leucine zipper protein athb-6-like 0.0
Coding
biog2_v2.0_unigene1746 biogeco2 v2.0 348
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: c2-h2 zinc finger protein 0.0
Internal
biog2_v2.0_unigene1881 biogeco2 v2.0 1344
AutoFact: Ethylene receptor ETR1 n=2 Tax=core eudicotyledons RepID=B3FIA9_ACTDE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ethylene receptor 0.0
Putative Complete
biog2_v2.0_unigene1916 biogeco2 v2.0 623
AutoFact: ERM multi-domain protein 9.0e-06
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene1922 biogeco2 v2.0 885
AutoFact: MADS-box protein n=3 Tax=Pinaceae RepID=O04406_PINRA 0.0
FL-Next: tr=MADS-box protein; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Blast2go: mads-box protein 0.0
N-terminus
biog2_v2.0_unigene1983 biogeco2 v2.0 804
AutoFact: DNA repair protein RAD51 homolog n=1 Tax=Solanum lycopersicum RepID=RAD51_SOLLC 0.0
FL-Next: sp=DNA repair protein RAD51 homolog B; Zea mays (Maize). 0.0
Blast2go: dna repair protein rad51 homolog 0.0
C-terminus
biog2_v2.0_unigene2101 biogeco2 v2.0 537
AutoFact: TGA-type basic leucine zipper protein TGA2.2 [Phaseolus vulgaris] 0.0
FL-Next: sp=Transcription factor HBP-1b(c38); Triticum aestivum (Wheat). 0.0
Blast2go: tga transcription factor 0.0
Internal
biog2_v2.0_unigene2189 biogeco2 v2.0 305
AutoFact: dehydration-responsive element-binding protein 3 [Arabidopsis thaliana] sp|Q9LYD3.1|DREB3_ARATH RecName: Full=Dehydration-responsive element-binding protein 3; AltName: Full=Protein TINY 2 emb|CAB87719.1| transcription factor like protein [Arabidopsis tha 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dehydration-responsive element-binding protein 3-like 0.0
Internal
biog2_v2.0_unigene2194 biogeco2 v2.0 670
AutoFact: Transcription factor RF2a, putative n=1 Tax=Ricinus communis RepID=B9SU10_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor 21 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain