Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene13939 biogeco2 v2.0 538
• AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna topoisomerase ii 0.0
N-terminus
biog2_v2.0_unigene14014 biogeco2 v2.0 362
• AutoFact: protein TWIN LOV 1 [Arabidopsis thaliana] dbj|BAB83170.1| twin LOV protein 1 [Arabidopsis thaliana] gb|AEC05613.1| protein TWIN LOV 1 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein twin lov 1 0.0
N-terminus
biog2_v2.0_unigene14127 biogeco2 v2.0 168
• AutoFact: PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana] dbj|BAD95354.1| receptor like protein [Arabidopsis thaliana] gb|AEE84563.1| PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana] 0.0
• Blast2go: ebs-bah-phd domain-containing protein 0.0
unknown
biog2_v2.0_unigene14242 biogeco2 v2.0 215
• AutoFact: sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gb|AAM13041.1| unknown protein [Arabidopsis thaliana] gb|AAO30091.1| unknown protein [Arabidopsis thaliana] gb|AEE76088.1| sequence-specific DNA binding transcription factor [Arabid 0.0
• Blast2go: sequence-specific dna binding transcription factor 0.0
unknown
biog2_v2.0_unigene14326 biogeco2 v2.0 400
• AutoFact: Map3k delta-1 protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RZR2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein kinase 0.0
Putative N-terminus
biog2_v2.0_unigene14527 biogeco2 v2.0 454
• AutoFact: Class III homeodomain leucine zipper protein n=6 Tax=Spermatophyta RepID=E7DX26_PICGL 0.0
• FL-Next: tr=Class III HD-Zip protein HDZ32; Pinus taeda (Loblolly pine). 0.0
• Blast2go: homeodomain-leucine zipper trancription factor hb-3 0.0
N-terminus
biog2_v2.0_unigene14606 biogeco2 v2.0 345
• AutoFact: GRAS family transcription factor n=2 Tax=Populus trichocarpa RepID=B9GTP1_POPTR 0.0
• Blast2go: scarecrow-like protein 1-like 0.0
unknown
biog2_v2.0_unigene14624 biogeco2 v2.0 143
• AutoFact: Myc2 bHLH protein n=2 Tax=Vitis vinifera RepID=A6NAB4_VITVI 0.0
• Blast2go: transcription factor bhlh13 0.0
unknown
biog2_v2.0_unigene14715 biogeco2 v2.0 373
• AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: fact complex subunit ssrp1 4.50652e-37
Internal
biog2_v2.0_unigene14717 biogeco2 v2.0 356
• AutoFact: homeodomain-leucine zipper protein 57 [Glycine max] 5.0e-34
• Blast2go: homeobox-leucine zipper protein athb-6-like 2.01282e-38
unknown
biog2_v2.0_unigene14777 biogeco2 v2.0 264
• AutoFact: mediator of RNA polymerase II transcription subunit 31 [Arabidopsis thaliana] sp|Q8VYB1.1|MED31_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 31; AltName: Full=Mediator complex subunit 31; AltName: Full=Mediator complex subunit S 0.0
• Blast2go: mediator of rna polymerase ii transcription subunit 31 0.0
unknown
biog2_v2.0_unigene14793 biogeco2 v2.0 305
• AutoFact: transcription factor DP1 [Populus tremula x Populus tremuloides] gb|AAP73785.1| DP1 [Populus tremula x Populus tremuloides] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor e2 dimerization partner protein 0.0
Internal
biog2_v2.0_unigene14827 biogeco2 v2.0 384
• AutoFact: Tubby-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPK2_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: tubby-like f-box protein 3 0.0
Internal
biog2_v2.0_unigene14866 biogeco2 v2.0 303
• AutoFact: zinc finger CCCH domain-containing protein 20 [Arabidopsis thaliana] sp|O82199.1|C3H20_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 20; Short=AtC3H20 gb|AAC62135.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana] gb|AAM6084 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ccch-type zinc finger protein 0.0
Internal
biog2_v2.0_unigene14920 biogeco2 v2.0 151
• AutoFact: zinc finger CCCH domain-containing protein 20 [Arabidopsis thaliana] sp|O82199.1|C3H20_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 20; Short=AtC3H20 gb|AAC62135.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana] gb|AAM6084 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ccch-type zinc finger protein 0.0
Internal
biog2_v2.0_unigene15002 biogeco2 v2.0 358
• AutoFact: Homeobox 1 n=1 Tax=Picea abies RepID=Q9FR59_PICAB 0.0
• FL-Next: tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Blast2go: homeobox-leucine zipper protein hdg2-like 0.0
Internal
biog2_v2.0_unigene15145 biogeco2 v2.0 536
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene15149 biogeco2 v2.0 394
• AutoFact: TGA-type basic leucine zipper protein TGA2.2 [Phaseolus vulgaris] 0.0
• Blast2go: tga transcription factor 0.0
Coding
biog2_v2.0_unigene15306 biogeco2 v2.0 290
• AutoFact: Drought responsive element binding protein 2 n=3 Tax=Glycine max RepID=C5IU97_SOYBN 1.0e-30
• Blast2go: dehydration-responsive element binding protein 2 1.38465e-38
Putative coding
biog2_v2.0_unigene15478 biogeco2 v2.0 337
• AutoFact: transcription factor DP1 [Populus tremula x Populus tremuloides] gb|AAP73785.1| DP1 [Populus tremula x Populus tremuloides] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor e2 dimerization partner protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain