Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene15 biogeco2 v2.0 335
AutoFact: Putative methyl-binding domain protein n=1 Tax=Cryptomeria japonica RepID=Q1XG62_CRYJA 1.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methyl-cpg-binding domain 10 3.65069e-35
Putative N-terminus
biog2_v2.0_unigene98 biogeco2 v2.0 124
AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QYR7_ORYSJ 9.0e-10
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: retrotransposon ty1-copia subclass 1.74658e-09
Internal
biog2_v2.0_unigene112 biogeco2 v2.0 561
AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
FL-Next: Isoform 2 of ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM 0.0
Blast2go: atp-dependent helicase brm-like 0.0
Internal
biog2_v2.0_unigene179 biogeco2 v2.0 347
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 0.0
FL-Next: Isoform 2 of FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 0.0
Blast2go: fact complex subunit ssrp1 0.0
Internal
biog2_v2.0_unigene192 biogeco2 v2.0 449
AutoFact: DNA repair protein xp-E, putative n=1 Tax=Ricinus communis RepID=B9SKT9_RICCO 0.0
FL-Next: sp=DNA damage-binding protein 1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Blast2go: dna damage-binding protein 1a 0.0
C-terminus
biog2_v2.0_unigene226 biogeco2 v2.0 414
AutoFact: Caldesmon multi-domain protein 7.0e-08
Blast2go: protein 0.0
Coding
biog2_v2.0_unigene322 biogeco2 v2.0 493
AutoFact: AP2 domain-containing transcription factor 7 n=1 Tax=Glycine max RepID=C9WA65_SOYBN 2.0e-31
Blast2go: dehydration responsive element binding protein 7.17662e-34
Coding
biog2_v2.0_unigene334 biogeco2 v2.0 252
AutoFact: Origin recognition complex subunit, putative n=1 Tax=Ricinus communis RepID=B9S8V3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: origin recognition complex subunit 6 0.0
Putative N-terminus
biog2_v2.0_unigene347 biogeco2 v2.0 195
AutoFact: perakine reductase [Rauvolfia serpentina] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: aldo keto 0.0
C-terminus
biog2_v2.0_unigene350 biogeco2 v2.0 566
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RSE9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100258626 0.0
C-terminus
biog2_v2.0_unigene413 biogeco2 v2.0 1088
AutoFact: AT-hook DNA-binding protein [Gossypium hirsutum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Putative Complete
biog2_v2.0_unigene444 biogeco2 v2.0 1082
AutoFact: Ebs-bah-phd domain-containing protein n=7 Tax=Magnoliophyta RepID=B9IAJ0_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ebs-bah-phd domain-containing protein 0.0
Complete
biog2_v2.0_unigene526 biogeco2 v2.0 602
AutoFact: Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 0.0
C-terminus
biog2_v2.0_unigene533 biogeco2 v2.0 600
AutoFact: transcription factor DcMYB3-1 [Daucus carota] 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor tt2-like 0.0
N-terminus
biog2_v2.0_unigene561 biogeco2 v2.0 539
AutoFact: putative multiple stress-responsive zinc-finger protein [Citrus hybrid cultivar] 2.99878e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
biog2_v2.0_unigene585 biogeco2 v2.0 279
AutoFact: ARID multi-domain protein 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: high mobility group family 0.0
Internal
biog2_v2.0_unigene612 biogeco2 v2.0 662
AutoFact: DNA binding protein [Arabidopsis thaliana] gb|AAG51077.1|AC069472_17 unknown protein; 19524-20560 [Arabidopsis thaliana] gb|AAM64678.1| unknown [Arabidopsis thaliana] gb|AEE75167.1| DNA binding protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding protein 0.0
N-terminus
biog2_v2.0_unigene648 biogeco2 v2.0 541
AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: minichromosome maintenance protein 0.0
Internal
biog2_v2.0_unigene650 biogeco2 v2.0 622
AutoFact: RecName: Full=Ornithine carbamoyltransferase, chloroplastic; AltName: Full=Ornithine transcarbamylase; Short=OTCase; Flags: Precursor gb|AAA74997.1| ornithine carbamoyltransferase [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ornithine carbamoyltransferase 0.0
N-terminus
biog2_v2.0_unigene692 biogeco2 v2.0 254
AutoFact: yippee-like protein [Arabidopsis thaliana] gb|AAM62838.1| Yippee-like protein [Arabidopsis thaliana] gb|AAN71946.1| unknown protein [Arabidopsis thaliana] dbj|BAH20057.1| AT2G40110 [Arabidopsis thaliana] gb|AEC09780.1| yippee-like protein [Arabidopsis tha 7.0e-36
Blast2go: fad nad binding 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain