Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene8666 biogeco2 v2.0 497
• AutoFact: DsRNA-specific nuclease dicer and related ribonuclease n=2 Tax=Physcomitrella patens RepID=A9RV91_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: endoribonuclease dicer 0.0
C-terminus
biog2_v2.0_unigene8669 biogeco2 v2.0 365
• AutoFact: abscisic acid responsive element-binding protein 2 [Populus suaveolens] 9.0e-35
• Blast2go: dna binding 0.0
unknown
biog2_v2.0_unigene8804 biogeco2 v2.0 530
• AutoFact: Ethylene response factor 1 n=1 Tax=Cucumis sativus RepID=Q5S004_CUCSA 4.0e-14
• Blast2go: ethylene-responsive element binding factor-like protein 1.6707e-15
Putative coding
biog2_v2.0_unigene8830 biogeco2 v2.0 535
• AutoFact: DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] gb|AAK25914.1|AF360204_1 unknown protein [Arabidopsis thaliana] dbj|BAB02324.1| unnamed protein product [Arabidopsis thaliana] gb|AAK64110.1| unknown protein [Arabidopsis thaliana] gb|AEE754 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerase i subunit rpa49 0.0
N-terminus
biog2_v2.0_unigene8852 biogeco2 v2.0 376
• AutoFact: Caldesmon multi-domain protein 7.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative N-terminus
biog2_v2.0_unigene8878 biogeco2 v2.0 393
• AutoFact: Zinc finger-homeodomain protein 2 n=1 Tax=Saruma henryi RepID=B0LK13_SARHE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene8887 biogeco2 v2.0 289
• AutoFact: MYB transcription factor MYB107 [Glycine max] 2.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: myb transcription factor myb107 0.0
Putative C-terminus
biog2_v2.0_unigene8931 biogeco2 v2.0 853
• AutoFact: high mobility group-box and ARID domain-binding domain-containing protein [Arabidopsis thaliana] sp|Q9MAT6.1|HMG15_ARATH RecName: Full=High mobility group B protein 15; AltName: Full=Nucleosome/chromatin assembly factor group D 15 gb|AAF40449.1|AC004809_7 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: high mobility group family 0.0
Putative N-terminus
biog2_v2.0_unigene8945 biogeco2 v2.0 498
• AutoFact: Histidyl-tRNA synthetase n=3 Tax=Andropogoneae RepID=B6TS97_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein Sb03g003570; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
• Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene8994 biogeco2 v2.0 390
• AutoFact: Dof transcription factor n=1 Tax=Pinus pinaster RepID=B0BCH1_PINPS 0.0
• Blast2go: dof zinc finger 0.0
unknown
biog2_v2.0_unigene9029 biogeco2 v2.0 313
• AutoFact: putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb|EAZ07603.1| hypothetical protein OsI_29854 [Oryza sativa Indica Group] 5.60519e-45
• Blast2go: dna binding 0.0
unknown
biog2_v2.0_unigene9082 biogeco2 v2.0 457
• AutoFact: cohesin complex subunit SA-1/2 [Arabidopsis thaliana] emb|CAB45374.1| stromalin protein [Arabidopsis thaliana] gb|AAL36271.1| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gb|AAC63652.2| putative putative sister-chromatide co 0.0
• Blast2go: sister-chromatide cohesion protein 0.0
Coding
biog2_v2.0_unigene9190 biogeco2 v2.0 571
• AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9T0T3_RICCO 2.0e-32
• FL-Next: tr=Dof domain zinc finger DNA-binding protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Blast2go: dof zinc finger protein 8.13057e-36
Internal
biog2_v2.0_unigene9217 biogeco2 v2.0 496
• AutoFact: Ethylene transcription factor n=2 Tax=Fagus sylvatica RepID=Q70AB2_FAGSY 6.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ap2 domain containing protein 2.25605e-23
Putative N-terminus
biog2_v2.0_unigene9283 biogeco2 v2.0 333
• AutoFact: ROOT HAIRLESS 1 [Arabidopsis thaliana] 0.0
• FL-Next: sp=DNA-binding protein RHL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: root hairless 1 0.0
Putative N-terminus
biog2_v2.0_unigene9301 biogeco2 v2.0 364
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 9 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 53-like 0.0
Internal
biog2_v2.0_unigene9314 biogeco2 v2.0 634
• AutoFact: MYB transcription factor MYB93 n=2 Tax=Glycine max RepID=Q0PJJ8_SOYBN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: myb family transcription factor 0.0
C-terminus
biog2_v2.0_unigene9323 biogeco2 v2.0 575
• AutoFact: exocyst complex component 5 [Arabidopsis thaliana] ref|NP_568270.3| exocyst complex component 5 [Arabidopsis thaliana] sp|Q8RVQ5.2|EXOC5_ARATH RecName: Full=Exocyst complex component 5; AltName: Full=Exocyst complex component Sec10 dbj|BAD95324.1| putativ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: exocyst complex component 5 0.0
N-terminus
biog2_v2.0_unigene9360 biogeco2 v2.0 390
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gb|AAF79432.1|AC025808_14 F18O14.27 [Arabidopsis thaliana] gb|AEE29863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] 0.0
• Blast2go: pentatricopeptide repeat-containing protein 0.0
unknown
biog2_v2.0_unigene9371 biogeco2 v2.0 363
• AutoFact: AP2-related transcription factor AP2L3 (Fragment) n=2 Tax=Picea RepID=Q106U2_PICAB 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: apetala2-like protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain