Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene8069 biogeco2 v2.0 291
• AutoFact: Ethylene transcription factor n=2 Tax=Fagus sylvatica RepID=Q70AB2_FAGSY 6.0e-19
• Blast2go: ap2 domain containing protein 2.25605e-23
unknown
biog2_v2.0_unigene8080 biogeco2 v2.0 248
• AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
Internal
biog2_v2.0_unigene8095 biogeco2 v2.0 475
• AutoFact: DNA mismatch repair protein MSH6-2, putative n=1 Tax=Ricinus communis RepID=B9RKT8_RICCO 0.0
• FL-Next: sp=DNA mismatch repair protein Msh6-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna mismatch repair protein msh6-2 0.0
Internal
biog2_v2.0_unigene8119 biogeco2 v2.0 349
• AutoFact: minichromosomal maintenance factor [Triticum aestivum] 0.0
• Blast2go: minichromosome maintenance protein 2 0.0
unknown
biog2_v2.0_unigene8137 biogeco2 v2.0 668
• AutoFact: BAH-PHD domain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TSM0_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ebs-bah-phd domain-containing protein 0.0
C-terminus
biog2_v2.0_unigene8157 biogeco2 v2.0 391
• AutoFact: Origin recognition complex subunit, putative n=1 Tax=Ricinus communis RepID=B9S8V3_RICCO 0.0
• FL-Next: sp=Origin recognition complex subunit 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: origin recognition complex subunit 6 0.0
N-terminus
biog2_v2.0_unigene8183 biogeco2 v2.0 392
• AutoFact: Alba multi-domain protein 3.0e-16
• Blast2go: protein 0.0
Coding
biog2_v2.0_unigene8201 biogeco2 v2.0 680
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TE60_VITVI 0.0
• FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna topoisomerase i 0.0
Internal
biog2_v2.0_unigene8229 biogeco2 v2.0 885
• AutoFact: DNA binding protein Rav [Capsicum annuum] 9.0e-36
• FL-Next: tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). 0.0
• Blast2go: dna-binding protein rav1 0.0
Putative N-terminus
biog2_v2.0_unigene8294 biogeco2 v2.0 536
• AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor bhlh62-like 0.0
C-terminus
biog2_v2.0_unigene8346 biogeco2 v2.0 810
• AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
• FL-Next: tr=Os03g0214100 protein; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: replication protein a 70 kda dna-binding subunit-like 0.0
Internal
biog2_v2.0_unigene8368 biogeco2 v2.0 333
• AutoFact: Ethylene-responsive transcription factor 1A n=1 Tax=Medicago truncatula RepID=A9P6A4_MEDTR 3.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ethylene-responsive transcription factor 1a 0.0
C-terminus
biog2_v2.0_unigene8369 biogeco2 v2.0 475
• AutoFact: DNA-directed RNA polymerase subunit n=1 Tax=Picea sitchensis RepID=D5AAK0_PICSI 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerases iii kda 0.0
Complete
biog2_v2.0_unigene8384 biogeco2 v2.0 463
• AutoFact: DNA polymerase delta catalytic subunit n=6 Tax=Poaceae RepID=DPOD1_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna polymerase delta subunit 1 0.0
C-terminus
biog2_v2.0_unigene8409 biogeco2 v2.0 413
• AutoFact: Caldesmon multi-domain protein 7.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene8502 biogeco2 v2.0 810
• AutoFact: putative helicase [Arabidopsis thaliana] 0.0
• Blast2go: dna helicase ino80-like 0.0
Putative coding
biog2_v2.0_unigene8505 biogeco2 v2.0 504
• AutoFact: Predicted protein n=2 Tax=Physcomitrella patens RepID=A9SU35_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative C-terminus
biog2_v2.0_unigene8516 biogeco2 v2.0 441
• AutoFact: uncharacterized protein [Arabidopsis thaliana] dbj|BAB09821.1| unnamed protein product [Arabidopsis thaliana] gb|AAM78111.1| AT5g23040/MYJ24_3 [Arabidopsis thaliana] gb|AAN28774.1| At5g23040/MYJ24_3 [Arabidopsis thaliana] dbj|BAD95465.1| cell growth defec 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene8622 biogeco2 v2.0 706
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SGW9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: myb-cc type transfactor 0.0
C-terminus
biog2_v2.0_unigene8656 biogeco2 v2.0 252
• AutoFact: DNA-directed RNA polymerase subunit n=1 Tax=Picea sitchensis RepID=D5AAK0_PICSI 0.0
• Blast2go: dna-directed rna polymerases iii kda 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain