Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene6162 biogeco2 v2.0 1014
• AutoFact: DNA-binding protein MNB1B, putative n=1 Tax=Ricinus communis RepID=B9SQ35_RICCO 2.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: high mobility group b2 protein 0.0
Complete
biog2_v2.0_unigene6176 biogeco2 v2.0 535
• AutoFact: DOF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIX8_MALDO 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: f-box family protein 2.8026e-45
Complete
biog2_v2.0_unigene6179 biogeco2 v2.0 662
• AutoFact: Squamosa promoter-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RVW3_RICCO 3.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: squamosa promoter-binding 0.0
C-terminus
biog2_v2.0_unigene6189 biogeco2 v2.0 1117
• AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
• FL-Next: sp=DNA replication licensing factor MCM3 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: minichromosome maintenance protein 0.0
Putative C-terminus
biog2_v2.0_unigene6238 biogeco2 v2.0 498
• AutoFact: Putative methyl-binding domain protein n=1 Tax=Cryptomeria japonica RepID=Q1XG62_CRYJA 9.94922e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: methyl-binding domain protein 0.0
N-terminus
biog2_v2.0_unigene7018 biogeco2 v2.0 697
• AutoFact: Predicted protein n=2 Tax=Physcomitrella patens RepID=A9TKM8_PHYPA 0.0
• Blast2go: protein 0.0
unknown
biog2_v2.0_unigene7030 biogeco2 v2.0 1151
• AutoFact: putative replication licensing factor MCM4 [Oryza sativa Japonica Group] 0.0
• FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna replication licensing factor mcm4 0.0
Internal
biog2_v2.0_unigene7061 biogeco2 v2.0 861
• AutoFact: Putative MYB transcription factor n=1 Tax=Rosa rugosa RepID=F2QKV9_ROSRU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: myb family transcription factor 0.0
Internal
biog2_v2.0_unigene7262 biogeco2 v2.0 606
• AutoFact: Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula] 0.0
• Blast2go: nucleic acid binding 0.0
unknown
biog2_v2.0_unigene7283 biogeco2 v2.0 580
• AutoFact: RecName: Full=Ornithine carbamoyltransferase, chloroplastic; AltName: Full=Ornithine transcarbamylase; Short=OTCase; Flags: Precursor gb|AAA74997.1| ornithine carbamoyltransferase [Pisum sativum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ornithine carbamoyltransferase 0.0
C-terminus
biog2_v2.0_unigene7298 biogeco2 v2.0 412
• AutoFact: Putative MYB transcription factor n=1 Tax=Rosa rugosa RepID=F2QKV9_ROSRU 0.0
• Blast2go: myb family transcription factor 0.0
unknown
biog2_v2.0_unigene7366 biogeco2 v2.0 483
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 9 0.0
• Blast2go: dead-box atp-dependent rna helicase 53-like 0.0
unknown
biog2_v2.0_unigene7405 biogeco2 v2.0 835
• AutoFact: GATA transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RQG2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative N-terminus
biog2_v2.0_unigene7477 biogeco2 v2.0 485
• AutoFact: Putative MYB transcription factor n=1 Tax=Rosa rugosa RepID=F2QKV9_ROSRU 0.0
• Blast2go: myb family transcription factor 0.0
unknown
biog2_v2.0_unigene7504 biogeco2 v2.0 731
• AutoFact: Origin recognition complex subunit, putative n=1 Tax=Ricinus communis RepID=B9S8V3_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: origin recognition complex subunit 6 0.0
Complete
biog2_v2.0_unigene7604 biogeco2 v2.0 621
• AutoFact: Mini zinc finger 1 n=1 Tax=Welwitschia mirabilis RepID=B0LK08_WELMI 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: mini zinc finger 1 8.51857e-37
C-terminus
biog2_v2.0_unigene7636 biogeco2 v2.0 548
• AutoFact: Zinc finger-homeodomain protein 2 n=1 Tax=Saruma henryi RepID=B0LK13_SARHE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene7665 biogeco2 v2.0 823
• AutoFact: Poly [ADP-ribose] polymerase 1 [Arabidopsis thaliana] sp|Q9ZP54.2|PARP1_ARATH RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1; AltName: Full=NAD(+) ADP-ribosyltransferase 1; Short=ADPRT-1; AltName: Full=Poly[ADP-ribose] synthase 1 emb|CAA10482. 7.00005e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: poly 0.0
N-terminus
biog2_v2.0_unigene7847 biogeco2 v2.0 523
• AutoFact: SET domain protein SDG111 [Zea mays] gb|AAO32934.2| SET domain protein SDG111 [Zea mays] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: histone-lysine n- h3 lysine-9 specific suvh1 0.0
Putative Complete
biog2_v2.0_unigene7954 biogeco2 v2.0 148
• AutoFact: translation initiation factor 3 subunit B [Arabidopsis thaliana] sp|Q9C5Z1.1|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb|AAG53615.1|AF2 0.0
• Blast2go: eukaryotic translation initiation factor 3 subunit b-like 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain