Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene17780 biogeco2 v2.0 138
• AutoFact: translation initiation factor 3 subunit B [Arabidopsis thaliana] sp|Q9C5Z1.1|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb|AAG53615.1|AF2 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: eukaryotic translation initiation factor 3 subunit b-like 0.0
Internal
biog2_v2.0_unigene17827 biogeco2 v2.0 848
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SGW9_RICCO 9.80909e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: two-component response regulator ehd1 0.0
C-terminus
biog2_v2.0_unigene17840 biogeco2 v2.0 1071
• AutoFact: CTP_transf_2 domain containing protein 2.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: phosphopantetheine adenylyltransferase 0.0
Complete
biog2_v2.0_unigene17905 biogeco2 v2.0 984
• AutoFact: AT hook motif-containing protein [Arabidopsis thaliana] dbj|BAH20420.1| AT5G54930 [Arabidopsis thaliana] gb|AED96559.1| AT hook motif-containing protein [Arabidopsis thaliana] 1.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: at hook motif-containing protein 0.0
Complete
biog2_v2.0_unigene17967 biogeco2 v2.0 84
• AutoFact: protein ULTRAPETALA 1 [Arabidopsis thaliana] sp|Q8GZA8.1|ULT1_ARATH RecName: Full=Protein ULTRAPETALA 1 dbj|BAC41785.1| unknown protein [Arabidopsis thaliana] gb|ABH04520.1| At4g28190 [Arabidopsis thaliana] gb|AEE85451.1| protein ULTRAPETALA 1 [Arabidopsi 0.0
• Blast2go: protein ultrapetala 1 0.0
unknown
biog2_v2.0_unigene18027 biogeco2 v2.0 357
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Blast2go: rna polymerase iv second largest subunit 0.0
Internal
biog2_v2.0_unigene18071 biogeco2 v2.0 398
• AutoFact: transcription factor bHLH76 [Arabidopsis thaliana] gb|AAS79545.1| putative transcription factor [Arabidopsis thaliana] emb|CAG25856.1| hypothetical protein [Arabidopsis thaliana] gb|AEE30669.1| transcription factor bHLH76 [Arabidopsis thaliana] 3.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor bhlh76 0.0
C-terminus
biog2_v2.0_unigene18350 biogeco2 v2.0 126
• AutoFact: R2R3-MYB transcription factor MYB22 (Fragment) n=1 Tax=Pinus taeda RepID=C0JTE2_PINTA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor myb4 0.0
N-terminus
biog2_v2.0_unigene18362 biogeco2 v2.0 262
• AutoFact: putative helicase [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: dead-like helicase domain-containing protein 0.0
Internal
biog2_v2.0_unigene18403 biogeco2 v2.0 401
• AutoFact: Zinc finger A20 and AN1 domain-containing stress-associated protein 8 n=3 Tax=Oryza sativa RepID=SAP8_ORYSJ 4.00001e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: multiple stress-responsive zinc-finger protein 0.0
Putative N-terminus
biog2_v2.0_unigene18497 biogeco2 v2.0 269
• AutoFact: Pseudo response regulator n=1 Tax=Selaginella moellendorffii RepID=D8T4E0_SELML 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pseudo response regulator 0.0
C-terminus
biog2_v2.0_unigene18672 biogeco2 v2.0 729
• AutoFact: Similarity to ribonuclease III n=1 Tax=Cryptomeria japonica RepID=Q1XG54_CRYJA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ribonuclease iii 0.0
N-terminus
biog2_v2.0_unigene18784 biogeco2 v2.0 243
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gb|AAF79432.1|AC025808_14 F18O14.27 [Arabidopsis thaliana] gb|AEE29863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pentatricopeptide repeat-containing protein 0.0
Putative Complete
biog2_v2.0_unigene18836 biogeco2 v2.0 439
• AutoFact: R2R3-MYB transcription factor MYB5 n=1 Tax=Picea glauca RepID=A5JYE9_PICGL 0.0
• FL-Next: tr=R2R3-MYB transcription factor MYB5; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: myb-like protein 0.0
Putative N-terminus
biog2_v2.0_unigene18901 biogeco2 v2.0 529
• AutoFact: transcription factor DcMYB5 [Daucus carota] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor tt2-like 0.0
Internal
biog2_v2.0_unigene18920 biogeco2 v2.0 733
• AutoFact: AINTEGUMENTA-like protein n=1 Tax=Pinus thunbergii RepID=Q76H96_PINTH 0.0
• FL-Next: tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Blast2go: ap2 domain-containing transcription factor 0.0
Internal
biog2_v2.0_unigene18945 biogeco2 v2.0 584
• AutoFact: ROOT HAIRLESS 1 [Arabidopsis thaliana] 0.0
• FL-Next: sp=DNA-binding protein RHL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: root hairless 1 0.0
Internal
biog2_v2.0_unigene18995 biogeco2 v2.0 305
• AutoFact: High mobility group family n=1 Tax=Populus trichocarpa RepID=A9PB77_POPTR 2.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: high mobility group b protein 7-like 0.0
Putative C-terminus
biog2_v2.0_unigene19016 biogeco2 v2.0 605
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna-directed rna polymerase iii subunit rpc1-like 0.0
Internal
biog2_v2.0_unigene19017 biogeco2 v2.0 419
• AutoFact: R2R3-Myb5 transcription factor (Fragment) n=2 Tax=Pinus RepID=B1PPT8_PINPS 0.0
• FL-Next: tr=R2R3-MYB transcription factor MYB5; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: myb-like protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain