Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene16700 biogeco2 v2.0 236
AutoFact: putative DNA-binding protein [Arabidopsis thaliana] gb|AED94034.1| putative DNA-binding protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-binding protein smubp-2-like 0.0
C-terminus
biog2_v2.0_unigene16724 biogeco2 v2.0 247
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RCQ0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: high mobility group family 0.0
Internal
biog2_v2.0_unigene16751 biogeco2 v2.0 371
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 0.0
FL-Next: sp=FACT complex subunit SSRP1; Vicia faba (Broad bean) (Faba vulgaris). 0.0
Blast2go: fact complex subunit ssrp1 0.0
Internal
biog2_v2.0_unigene16831 biogeco2 v2.0 447
AutoFact: NAC domain containing protein 28 [Arabidopsis thaliana] gb|AAF06052.1|AC009513_8 Contains similarity to gb|AF123310 NAC domain protein NAM gene from Arabidopsis thaliana gb|AEE34440.1| NAC domain containing protein 28 [Arabidopsis thaliana] 8.99999e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nac domain ipr003441 0.0
Internal
biog2_v2.0_unigene16839 biogeco2 v2.0 630
AutoFact: heat shock factor protein hsf8-related [Glycine max] 0.0
Blast2go: heat shock transcription factor 1 0.0
Putative coding
biog2_v2.0_unigene16873 biogeco2 v2.0 359
AutoFact: Isoform 2 of Lon protease homolog, mitochondrial n=2 Tax=Oryza sativa RepID=Q69UZ3-2 0.0
FL-Next: Isoform 2 of Lon protease homolog, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0689300 0.0
Blast2go: lon protease homolog mitochondrial-like 0.0
Internal
biog2_v2.0_unigene16987 biogeco2 v2.0 283
AutoFact: DUF3755 domain containing protein 2.0e-13
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene17040 biogeco2 v2.0 520
AutoFact: TATA-box binding protein [Phaseolus vulgaris] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tata-binding protein 0.0
Putative N-terminus
biog2_v2.0_unigene17064 biogeco2 v2.0 392
AutoFact: exocyst complex component 5 [Arabidopsis thaliana] ref|NP_568270.3| exocyst complex component 5 [Arabidopsis thaliana] sp|Q8RVQ5.2|EXOC5_ARATH RecName: Full=Exocyst complex component 5; AltName: Full=Exocyst complex component Sec10 dbj|BAD95324.1| putativ 0.0
FL-Next: sp=Exocyst complex component 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: exocyst complex component 5 0.0
Internal
biog2_v2.0_unigene17129 biogeco2 v2.0 284
AutoFact: Putative BEL1-like protein (Fragment) n=1 Tax=Gnetum gnemon RepID=Q7XA57_GNEGN 0.0
FL-Next: sp=BEL1-like homeodomain protein 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: bel1-like homeodomain 4 0.0
Internal
biog2_v2.0_unigene17161 biogeco2 v2.0 379
AutoFact: Lysine-specific histone demethylase, putative n=1 Tax=Ricinus communis RepID=B9R844_RICCO 2.0e-32
Blast2go: lysine-specific histone demethylase-like protein 0.0
unknown
biog2_v2.0_unigene17298 biogeco2 v2.0 423
AutoFact: Zn finger protein [Nicotiana tabacum] 2.0e-33
Blast2go: f-box family protein 3.1703e-41
Coding
biog2_v2.0_unigene17328 biogeco2 v2.0 213
AutoFact: DOF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIX8_MALDO 9.99995e-41
Blast2go: f-box family protein 2.8026e-45
Putative coding
biog2_v2.0_unigene17525 biogeco2 v2.0 337
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SGW9_RICCO 9.80909e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: two-component response regulator ehd1 0.0
N-terminus
biog2_v2.0_unigene17562 biogeco2 v2.0 470
AutoFact: Squamosa promoter-binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8V3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: squamosa promoter-binding-like protein 14-like 0.0
Internal
biog2_v2.0_unigene17603 biogeco2 v2.0 722
AutoFact: R2R3-MYB transcription factor MYB22 (Fragment) n=1 Tax=Pinus taeda RepID=C0JTE2_PINTA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: myb transcription factor 0.0
C-terminus
biog2_v2.0_unigene17622 biogeco2 v2.0 590
AutoFact: 50S ribosomal protein L21 n=4 Tax=Andropogoneae RepID=B6TJJ8_MAIZE 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 50s ribosomal protein l21 0.0
Internal
biog2_v2.0_unigene17625 biogeco2 v2.0 427
AutoFact: NAC domain-containing protein 78 [Arabidopsis thaliana] sp|Q84K00.2|NAC78_ARATH RecName: Full=NAC domain-containing protein 78; Short=ANAC078 emb|CAB85547.1| putative protein [Arabidopsis thaliana] gb|AAM20460.1| putative protein [Arabidopsis thaliana] gb 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nac domain ipr003441 0.0
Putative Complete
biog2_v2.0_unigene17657 biogeco2 v2.0 249
AutoFact: AP2 domain class transcription factor n=1 Tax=Malus x domestica RepID=D5L102_MALDO 2.0e-18
Blast2go: ethylene-responsive element binding factor-like protein 1.14863e-21
unknown
biog2_v2.0_unigene17703 biogeco2 v2.0 605
AutoFact: myb family transcription factor [Brassica oleracea] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain