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Assembly Name: biogeco2 v2.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene15804 biogeco2 v2.0 413
AutoFact: replication factor C 38 kDa subunit [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
biog2_v2.0_unigene15882 biogeco2 v2.0 205
AutoFact: Histone H2B.2 n=33 Tax=Spermatophyta RepID=H2B2_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone h2b 0.0
N-terminus
biog2_v2.0_unigene15902 biogeco2 v2.0 321
AutoFact: DNA polymerase delta catalytic subunit n=6 Tax=Poaceae RepID=DPOD1_ORYSJ 0.0
FL-Next: sp=DNA polymerase delta catalytic subunit; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dna polymerase delta subunit 1 0.0
Internal
biog2_v2.0_unigene15929 biogeco2 v2.0 236
AutoFact: Milkweed pod1 n=1 Tax=Zea mays RepID=B5LZ60_MAIZE 7.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rolled leaf 9 0.0
Internal
biog2_v2.0_unigene15970 biogeco2 v2.0 407
AutoFact: TATA binding protein associated factor n=1 Tax=Solanum tuberosum RepID=Q3LHL0_SOLTU 7.0e-37
Blast2go: transcription initiation factor tfiid subunit a 4.14924e-42
Putative coding
biog2_v2.0_unigene15983 biogeco2 v2.0 345
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RCQ0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: high mobility group family 0.0
Internal
biog2_v2.0_unigene16055 biogeco2 v2.0 440
AutoFact: SEUSS transcriptional co-regulator [Arabidopsis thaliana] ref|NP_001117434.1| SEUSS transcriptional co-regulator [Arabidopsis thaliana] sp|Q8W234.1|SEUSS_ARATH RecName: Full=Transcriptional corepressor SEUSS gb|AAL57277.1| SEUSS transcriptional co-regulat 0.0
Blast2go: seuss transcriptional co-regulator 0.0
Coding
biog2_v2.0_unigene16112 biogeco2 v2.0 399
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein phytoclock 1 0.0
Putative C-terminus
biog2_v2.0_unigene16122 biogeco2 v2.0 263
AutoFact: Predicted protein n=2 Tax=Physcomitrella patens RepID=A9TKM8_PHYPA 0.0
Blast2go: protein 0.0
Putative coding
biog2_v2.0_unigene16132 biogeco2 v2.0 387
AutoFact: AINTEGUMENTA-like protein n=1 Tax=Pinus thunbergii RepID=Q76H96_PINTH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ap2 domain-containing transcription factor 0.0
C-terminus
biog2_v2.0_unigene16210 biogeco2 v2.0 288
AutoFact: Pseudo response regulator n=1 Tax=Selaginella moellendorffii RepID=D8T4E0_SELML 0.0
FL-Next: tr=Golden 2-like protein 1; Physcomitrella patens. 0.0
Blast2go: pseudo response regulator 0.0
Internal
biog2_v2.0_unigene16255 biogeco2 v2.0 243
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 0.0
FL-Next: sp=FACT complex subunit SSRP1; Catharanthus roseus (Madagascar periwinkle) (Vinca rosea). 0.0
Blast2go: fact complex subunit ssrp1 0.0
Internal
biog2_v2.0_unigene16278 biogeco2 v2.0 465
AutoFact: genomes uncoupled 1 protein [Arabidopsis thaliana] sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Flags: Precursor gb|AAD26479.1| unknown protein [Arabidopsis thaliana] gb|AEC08542.1| genomes un 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Putative N-terminus
biog2_v2.0_unigene16290 biogeco2 v2.0 488
AutoFact: Transcription factor RF2a, putative n=1 Tax=Ricinus communis RepID=B9SU10_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor 21 0.0
Putative C-terminus
biog2_v2.0_unigene16507 biogeco2 v2.0 473
AutoFact: DNA polymerase I n=3 Tax=Andropogoneae RepID=B4FJZ1_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 5 -3 exonuclease-like protein 0.0
Internal
biog2_v2.0_unigene16538 biogeco2 v2.0 68
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7C9_RICCO 6.0e-20
Blast2go: protein 3.90149e-22
unknown
biog2_v2.0_unigene16575 biogeco2 v2.0 230
AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: minichromosome maintenance protein 0.0
Internal
biog2_v2.0_unigene16632 biogeco2 v2.0 295
AutoFact: Protein RCC2, putative n=1 Tax=Ricinus communis RepID=B9R853_RICCO 0.0
Blast2go: regulator of chromosome condensation family protein 0.0
unknown
biog2_v2.0_unigene16673 biogeco2 v2.0 127
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SGW9_RICCO 9.80909e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: two-component response regulator ehd1 0.0
Internal
biog2_v2.0_unigene16691 biogeco2 v2.0 339
AutoFact: methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref|NP_974850.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] ref|NP_001190421.1| methyl-CPG-binding domain protein 02 [Arabidopsis thaliana] sp|Q8LA53.1|MBD2_ARATH RecName: Full=M 0.0
FL-Next: sp=Methyl-CpG-binding domain-containing protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: methyl-cpg-binding domain protein 02 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain