Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene9539 biogeco2 v2.0 411
• AutoFact: MYB transcription factor [Hevea brasiliensis] 0.0
• Blast2go: dna binding 0.0
unknown
biog2_v2.0_unigene9621 biogeco2 v2.0 138
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 9 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 53-like 0.0
Internal
biog2_v2.0_unigene9630 biogeco2 v2.0 443
• AutoFact: myb family transcription factor [Brassica oleracea] 0.0
• Blast2go: protein 0.0
unknown
biog2_v2.0_unigene9633 biogeco2 v2.0 535
• AutoFact: DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri] emb|CAL53063.1| DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog2_v2.0_unigene9634 biogeco2 v2.0 811
• AutoFact: replication factor C 38 kDa subunit [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene9672 biogeco2 v2.0 370
• AutoFact: flap endonuclease-1 [Arabidopsis thaliana] gb|AED93576.1| flap endonuclease-1 [Arabidopsis thaliana] 0.0
• FL-Next: sp=Flap endonuclease 1-A; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: flap endonuclease 1a 0.0
Internal
biog2_v2.0_unigene9695 biogeco2 v2.0 674
• AutoFact: ARID multi-domain protein 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: high mobility group family 0.0
N-terminus
biog2_v2.0_unigene9700 biogeco2 v2.0 477
• AutoFact: Transcriptional adapter ADA2 n=9 Tax=Poaceae RepID=TADA2_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcriptional adapter ada2-like 0.0
Internal
biog2_v2.0_unigene9721 biogeco2 v2.0 267
• AutoFact: putative helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna helicase ino80-like 0.0
C-terminus
biog2_v2.0_unigene9751 biogeco2 v2.0 568
• AutoFact: R2R3-MYB transcription factor MYB11 [Picea glauca] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene9768 biogeco2 v2.0 409
• AutoFact: TATA-box binding protein [Phaseolus vulgaris] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: tata-binding protein 0.0
C-terminus
biog2_v2.0_unigene9771 biogeco2 v2.0 452
• AutoFact: DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri] emb|CAL53063.1| DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog2_v2.0_unigene9856 biogeco2 v2.0 341
• AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb1-like 0.0
N-terminus
biog2_v2.0_unigene9943 biogeco2 v2.0 669
• AutoFact: MYB transcription factor [Triticum aestivum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: myb transcription factor 0.0
Putative N-terminus
biog2_v2.0_unigene9956 biogeco2 v2.0 608
• AutoFact: auxin response factor 6 [Arabidopsis thaliana] sp|Q9ZTX8.2|ARFF_ARATH RecName: Full=Auxin response factor 6 gb|AAT67072.1| ARF6 [Arabidopsis thaliana] gb|AEE31207.1| auxin response factor 6 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). 0.0
• Blast2go: auxin response factor 6-like 0.0
Internal
biog2_v2.0_unigene9958 biogeco2 v2.0 429
• AutoFact: PREDICTED: similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI00019843BD 0.0
• FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: atp-dependent helicase rhp16-like 0.0
Internal
biog2_v2.0_unigene10020 biogeco2 v2.0 237
• AutoFact: Zinc finger-homeodomain protein 2 n=1 Tax=Saruma henryi RepID=B0LK13_SARHE 0.0
• Blast2go: protein 0.0
unknown
biog2_v2.0_unigene10040 biogeco2 v2.0 360
• AutoFact: DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] gb|AAK25914.1|AF360204_1 unknown protein [Arabidopsis thaliana] dbj|BAB02324.1| unnamed protein product [Arabidopsis thaliana] gb|AAK64110.1| unknown protein [Arabidopsis thaliana] gb|AEE754 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerase i subunit rpa49 0.0
Internal
biog2_v2.0_unigene10224 biogeco2 v2.0 478
• AutoFact: DNA repair protein xp-E, putative n=1 Tax=Ricinus communis RepID=B9SKT9_RICCO 0.0
• FL-Next: sp=DNA damage-binding protein 1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Blast2go: dna damage-binding protein 1a 0.0
Internal
biog2_v2.0_unigene10259 biogeco2 v2.0 535
• AutoFact: DNA-directed RNA polymerase subunit n=1 Tax=Picea sitchensis RepID=D5AAK0_PICSI 0.0
• Blast2go: dna-directed rna polymerases iii kda 0.0
Putative coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain