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Assembly Name: biogeco2 v2.0

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene11796 biogeco2 v2.0 269
AutoFact: Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein kinase 0.0
C-terminus
biog2_v2.0_unigene12005 biogeco2 v2.0 684
AutoFact: Homeodomain-like; Uridylate kinase [Medicago truncatula] 6.0e-28
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: uridylate kinase 7.33348e-30
C-terminus
biog2_v2.0_unigene12083 biogeco2 v2.0 379
AutoFact: [R] COG2319 FOG: WD40 repeat 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: flowering time control protein fy 0.0
Internal
biog2_v2.0_unigene12465 biogeco2 v2.0 249
AutoFact: Ferrochelatase n=1 Tax=Nicotiana tabacum RepID=Q949G2_TOBAC 0.0
FL-Next: sp=Ferrochelatase-2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ferrochelatase- chloroplastic-like 0.0
Internal
biog2_v2.0_unigene12563 biogeco2 v2.0 533
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein rrp5 homolog 0.0
C-terminus
biog2_v2.0_unigene13261 biogeco2 v2.0 711
AutoFact: serine/threonine-protein kinase AFC2 [Arabidopsis thaliana] sp|P51567.1|AFC2_ARATH RecName: Full=Serine/threonine-protein kinase AFC2 gb|AAA57118.1| protein kinase [Arabidopsis thaliana] dbj|BAA08214.1| protein kinase [Arabidopsis thaliana] emb|CAA22989.1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
biog2_v2.0_unigene13636 biogeco2 v2.0 310
AutoFact: RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subun 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene14184 biogeco2 v2.0 235
AutoFact: putative RNA-binding region RNP-1 and Splicing factor PWI family member protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: rna-binding protein 0.0
Internal
biog2_v2.0_unigene14673 biogeco2 v2.0 283
AutoFact: Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein kinase 0.0
Internal
biog2_v2.0_unigene16835 biogeco2 v2.0 438
AutoFact: Nuclear pre-mRNA splicing factor, component of splicing factor 3b (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8JHC1_CHLRE 0.0
FL-Next: tr=Putative uncharacterized protein Sb10g031230; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: splicing factor 3b subunit 0.0
Internal
biog2_v2.0_unigene17348 biogeco2 v2.0 501
AutoFact: putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein kinase 0.0
N-terminus
biog2_v2.0_unigene17658 biogeco2 v2.0 386
AutoFact: serine/threonine-protein kinase AFC2 [Arabidopsis thaliana] sp|P51567.1|AFC2_ARATH RecName: Full=Serine/threonine-protein kinase AFC2 gb|AAA57118.1| protein kinase [Arabidopsis thaliana] dbj|BAA08214.1| protein kinase [Arabidopsis thaliana] emb|CAA22989.1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
biog2_v2.0_unigene17873 biogeco2 v2.0 424
AutoFact: RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subun 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
biog2_v2.0_unigene18160 biogeco2 v2.0 209
AutoFact: PREDICTED: similar to splicing factor, putative n=1 Tax=Vitis vinifera RepID=UPI0001983CB2 0.0
FL-Next: tr=Nuclear protein-like; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: splicing factor 3b subunit 1-like 0.0
Internal
biog2_v2.0_unigene19406 biogeco2 v2.0 341
AutoFact: [R] COG2319 FOG: WD40 repeat 0.0
Blast2go: flowering time control protein fy 0.0
Coding
biog2_v2.0_unigene19448 biogeco2 v2.0 349
AutoFact: putative receptor-like protein kinase [Arabidopsis thaliana] 4.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lrr receptor-like serine threonine-protein kinase fei 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain