Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain

Term: IPR002687  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene7779 biogeco3 v1.0 1462
AutoFact: homolog of nucleolar protein NOP56 [Arabidopsis thaliana] gb|AAF02835.1|AC009894_6 nucleolar protein [Arabidopsis thaliana] gb|AAG40838.1|AF302492_1 NOP56-like protein [Arabidopsis thaliana] gb|AAK62596.1| At1g56110/T6H22_9 [Arabidopsis thaliana] gb|AAM26 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleolar protein 0.0
Complete
biog3_v1.0_unigene10350 biogeco3 v1.0 1392
AutoFact: MAR-binding protein [Nicotiana tabacum] 0.0
FL-Next: sp=Probable nucleolar protein 5-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable nucleolar protein 5-2-like 0.0
Putative N-terminus
biog3_v1.0_unigene13155 biogeco3 v1.0 1654
AutoFact: Nucleolar protein nop56, putative n=1 Tax=Ricinus communis RepID=B9RAI8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
biog3_v1.0_unigene13304 biogeco3 v1.0 425
AutoFact: Nucleolar protein nop56, putative n=1 Tax=Ricinus communis RepID=B9RAI8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog3_v1.0_unigene14030 biogeco3 v1.0 167
AutoFact: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Medicago truncatula] 0.0
Blast2go: u4 u6 small nuclear ribonucleoprotein prp31-like 0.0
unknown
biog3_v1.0_unigene14042 biogeco3 v1.0 343
AutoFact: MAR-binding protein [Nicotiana tabacum] 0.0
Blast2go: probable nucleolar protein 5-2-like 0.0
unknown
biog3_v1.0_unigene14772 biogeco3 v1.0 293
AutoFact: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Medicago truncatula] 0.0
FL-Next: tr=U4/U6 small nuclear ribonucleoprotein Prp31, putative; Ricinus communis (Castor bean). 0.0
Blast2go: u4 u6 small nuclear ribonucleoprotein prp31-like 0.0
Putative C-terminus
biog3_v1.0_unigene15604 biogeco3 v1.0 412
AutoFact: Nucleolar protein nop56, putative n=1 Tax=Ricinus communis RepID=B9RAI8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene17552 biogeco3 v1.0 137
AutoFact: homolog of nucleolar protein NOP56 [Arabidopsis thaliana] gb|AAF02835.1|AC009894_6 nucleolar protein [Arabidopsis thaliana] gb|AAG40838.1|AF302492_1 NOP56-like protein [Arabidopsis thaliana] gb|AAK62596.1| At1g56110/T6H22_9 [Arabidopsis thaliana] gb|AAM26 0.0
Blast2go: nucleolar protein 0.0
unknown
biog3_v1.0_unigene18581 biogeco3 v1.0 197
AutoFact: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: u4 u6 small nuclear ribonucleoprotein prp31-like 0.0
Internal
biog3_v1.0_unigene24802 biogeco3 v1.0 703
AutoFact: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Medicago truncatula] 0.0
FL-Next: sp=Putative nucleolar protein 5-3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: u4 u6 small nuclear ribonucleoprotein prp31-like 0.0
Putative N-terminus
biog3_v1.0_unigene25702 biogeco3 v1.0 103
AutoFact: MAR-binding protein [Nicotiana tabacum] 0.0
Blast2go: probable nucleolar protein 5-2-like 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain