Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: SWAP/Surp

Term: IPR000061  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene263 biogeco3 v1.0 463
• AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 0.0
• FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: probable splicing factor 3a subunit 1-like 0.0
Internal
biog3_v1.0_unigene507 biogeco3 v1.0 510
• AutoFact: SWAP/Surp domain-containing protein [Arabidopsis thaliana] gb|AAK64161.1| unknown protein [Arabidopsis thaliana] gb|AAM20098.1| unknown protein [Arabidopsis thaliana] gb|AED96581.1| SWAP/Surp domain-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: swap surp domain-containing protein 0.0
Putative N-terminus
biog3_v1.0_unigene1016 biogeco3 v1.0 1518
• AutoFact: Splicing factor 4-like protein [Arabidopsis thaliana] sp|Q94C11.1|SUGP1_ARATH RecName: Full=SURP and G-patch domain-containing protein 1-like protein; AltName: Full=Splicing factor 4-like protein; Short=SF4-like protein gb|AAK59860.1| AT3g52120/F4F15_230 0.0
• FL-Next: sp=SURP and G-patch domain-containing protein 1-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: swap domain-containing protein 0.0
Complete
biog3_v1.0_unigene1781 biogeco3 v1.0 296
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene1822 biogeco3 v1.0 373
• AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 6.0e-16
• Blast2go: helicase and zinc finger domain-containing protein 0.0
unknown
biog3_v1.0_unigene4545 biogeco3 v1.0 463
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNU3_RICCO 0.0
• FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: protein 0.0
Internal
biog3_v1.0_unigene5110 biogeco3 v1.0 239
• AutoFact: Splicing factor 4-like protein [Arabidopsis thaliana] sp|Q94C11.1|SUGP1_ARATH RecName: Full=SURP and G-patch domain-containing protein 1-like protein; AltName: Full=Splicing factor 4-like protein; Short=SF4-like protein gb|AAK59860.1| AT3g52120/F4F15_230 0.0
• Blast2go: swap domain-containing protein 0.0
unknown
biog3_v1.0_unigene6325 biogeco3 v1.0 368
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO 0.0
• FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: swap surp domain-containing protein 0.0
Internal
biog3_v1.0_unigene8438 biogeco3 v1.0 437
• AutoFact: SWAP/Surp domain-containing protein [Arabidopsis thaliana] gb|AAK64161.1| unknown protein [Arabidopsis thaliana] gb|AAM20098.1| unknown protein [Arabidopsis thaliana] gb|AED96581.1| SWAP/Surp domain-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=AT5G55100 protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: swap surp domain-containing protein 0.0
Internal
biog3_v1.0_unigene10406 biogeco3 v1.0 494
• AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 0.0
• FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: probable splicing factor 3a subunit 1-like 0.0
C-terminus
biog3_v1.0_unigene10638 biogeco3 v1.0 677
• AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 0.0
• FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: probable splicing factor 3a subunit 1-like 0.0
N-terminus
biog3_v1.0_unigene15865 biogeco3 v1.0 310
• AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 0.0
• Blast2go: probable splicing factor 3a subunit 1-like 0.0
Coding
biog3_v1.0_unigene17729 biogeco3 v1.0 226
• AutoFact: Splicing factor 4-like protein [Arabidopsis thaliana] sp|Q94C11.1|SUGP1_ARATH RecName: Full=SURP and G-patch domain-containing protein 1-like protein; AltName: Full=Splicing factor 4-like protein; Short=SF4-like protein gb|AAK59860.1| AT3g52120/F4F15_230 0.0
• Blast2go: swap domain-containing protein 0.0
unknown
biog3_v1.0_unigene18137 biogeco3 v1.0 199
• AutoFact: [DKT] COG5035 Cell cycle control protein 2.0e-35
• Blast2go: cell division control protein 50 0.0
unknown
biog3_v1.0_unigene18477 biogeco3 v1.0 236
• AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 6.0e-16
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: helicase and zinc finger domain-containing protein 0.0
Internal
biog3_v1.0_unigene18669 biogeco3 v1.0 275
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog3_v1.0_unigene20082 biogeco3 v1.0 284
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: swap surp domain-containing protein 0.0
Internal
biog3_v1.0_unigene23304 biogeco3 v1.0 275
• AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 0.0
• Blast2go: protein 0.0
Coding

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain