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Assembly Name: biogeco3 v1.0

Name: RNA-processing protein, HAT helix

Term: IPR003107  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene12009 biogeco3 v1.0 627
AutoFact: RelA-SpoT like protein RSH4 [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gtp pyrophosphokinase 0.0
Internal
biog3_v1.0_unigene14077 biogeco3 v1.0 149
AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 3.0e-29
Blast2go: tpr domain protein 0.0
unknown
biog3_v1.0_unigene14200 biogeco3 v1.0 214
AutoFact: Unassigned protein
Blast2go: protein rrp5 homolog 0.0
unknown
biog3_v1.0_unigene14219 biogeco3 v1.0 415
AutoFact: Unassigned protein
FL-Next: tr=Squamous cell carcinoma antigen recognized by T-cells, putative; Ricinus communis (Castor bean). 0.0
Blast2go: squamous cell carcinoma antigen recognized by t-cells 3-like 0.0
Internal
biog3_v1.0_unigene14841 biogeco3 v1.0 404
AutoFact: PREDICTED: similar to binding n=1 Tax=Vitis vinifera RepID=UPI00019836A8 0.0
Blast2go: tetratricopeptide repeat-containing protein 0.0
unknown
biog3_v1.0_unigene18049 biogeco3 v1.0 259
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: upf0614 protein c14orf102-like 3.78329e-36
Internal
biog3_v1.0_unigene18093 biogeco3 v1.0 229
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein rrp5 homolog 0.0
Internal
biog3_v1.0_unigene18110 biogeco3 v1.0 201
AutoFact: Squamous cell carcinoma antigen recognized by T-cells, putative n=1 Tax=Ricinus communis RepID=B9SPA3_RICCO 2.0e-14
FL-Next: tr=Squamous cell carcinoma antigen recognized by T-cells, putative; Ricinus communis (Castor bean). 0.0
Blast2go: squamous cell carcinoma antigen recognized by t-cells 3-like 1.17779e-17
Internal
biog3_v1.0_unigene18892 biogeco3 v1.0 300
AutoFact: Hepatocellular carcinoma-associated antigen, putative n=1 Tax=Ricinus communis RepID=B9RXI9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u3 small nucleolar rna-associated protein 6 homolog 0.0
N-terminus
biog3_v1.0_unigene19487 biogeco3 v1.0 151
AutoFact: putative pre-rRNA processing protein, 5' partial [Arabidopsis thaliana] 7.0e-28
FL-Next: tr=Pre-rRNA processing protein RRP5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein rrp5 homolog 9.86014e-33
Internal
biog3_v1.0_unigene19890 biogeco3 v1.0 245
AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 7.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tetratricopeptide repeat domain-containing protein 0.0
N-terminus
biog3_v1.0_unigene20572 biogeco3 v1.0 252
AutoFact: FAP multi-domain protein 8.0e-05
Blast2go: uncharacterized protein loc100809777 7.79977e-41
Coding
biog3_v1.0_unigene21469 biogeco3 v1.0 310
AutoFact: cell cycle control crn (crooked neck) protein-like [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: pre-mrna-splicing factor clf1 0.0
Internal
biog3_v1.0_unigene21871 biogeco3 v1.0 301
AutoFact: PREDICTED: similar to binding n=1 Tax=Vitis vinifera RepID=UPI00019836A8 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tetratricopeptide repeat-containing protein 0.0
Internal
biog3_v1.0_unigene23611 biogeco3 v1.0 165
AutoFact: Hepatocellular carcinoma-associated antigen, putative n=1 Tax=Ricinus communis RepID=B9RXI9_RICCO 0.0
Blast2go: u3 small nucleolar rna-associated protein 6 homolog 0.0
unknown
biog3_v1.0_unigene23717 biogeco3 v1.0 354
AutoFact: pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb|AAL07170.1| unknown protein [Arabidopsis thaliana] gb|AAM14126.1| unknown protein [Arabidopsis thaliana] gb|AAM65430.1| unknown [Arabidopsis thaliana] gb|AEE27652.1| pre-mRNA-processing factor 39 [Ar 1.0e-28
Blast2go: pre-mrna-processing factor 39 1.92438e-36
unknown
biog3_v1.0_unigene24376 biogeco3 v1.0 161
AutoFact: Unassigned protein
Blast2go: tetratricopeptide repeat domain-containing protein 2.8026e-45
unknown
biog3_v1.0_unigene24473 biogeco3 v1.0 408
AutoFact: Squamous cell carcinoma antigen recognized by T-cells, putative n=1 Tax=Ricinus communis RepID=B9SPA3_RICCO 0.0
FL-Next: tr=Squamous cell carcinoma antigen recognized by T-cells, putative; Ricinus communis (Castor bean). 0.0
Blast2go: squamous cell carcinoma antigen recognized by t-cells 3-like 0.0
Internal
biog3_v1.0_unigene24725 biogeco3 v1.0 452
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein rrp5 homolog 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain