Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: HMG-I/HMG-Y, DNA-binding, conserved site

Term: IPR000637  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene568 biogeco3 v1.0 332
AutoFact: ATPase splayed [Arabidopsis thaliana] gb|AEC08101.1| ATPase splayed [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atpase splayed 0.0
Internal
biog3_v1.0_unigene945 biogeco3 v1.0 343
AutoFact: bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gb|AAL86355.1| unknown protein [Arabidopsis thaliana] gb|AAM91681.1| unknown protein [Arabidopsis thaliana] gb|AEE83024.1| bromo-adjacent homology (BAH) domain-containing prote 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: bah and coiled-coil domain-containing protein 0.0
Internal
biog3_v1.0_unigene1881 biogeco3 v1.0 555
AutoFact: homeobox protein HAT3.1 [Arabidopsis thaliana] sp|Q04996.3|HAT31_ARATH RecName: Full=Homeobox protein HAT3.1 dbj|BAC41784.1| putative homeobox protein HAT3.1 [Arabidopsis thaliana] gb|AAO64900.1| At3g19510 [Arabidopsis thaliana] gb|AEE76250.1| homeobox pr 0.0
FL-Next: sp=Homeobox protein HAT3.1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: homeobox protein 0.0
Internal
biog3_v1.0_unigene2455 biogeco3 v1.0 808
AutoFact: protease Do-like 2 [Arabidopsis thaliana] sp|O82261.2|DEGP2_ARATH RecName: Full=Protease Do-like 2, chloroplastic; Flags: Precursor gb|AAG41447.1|AF326865_1 putative DegP2 protease [Arabidopsis thaliana] gb|AAK14061.1|AF245171_1 DegP2 protease [Arabidopsi 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protease do-like chloroplastic-like 0.0
Complete
biog3_v1.0_unigene4110 biogeco3 v1.0 299
AutoFact: protease Do-like 2 [Arabidopsis thaliana] sp|O82261.2|DEGP2_ARATH RecName: Full=Protease Do-like 2, chloroplastic; Flags: Precursor gb|AAG41447.1|AF326865_1 putative DegP2 protease [Arabidopsis thaliana] gb|AAK14061.1|AF245171_1 DegP2 protease [Arabidopsi 0.0
FL-Next: sp=Protease Do-like 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protease do-like chloroplastic-like 0.0
Internal
biog3_v1.0_unigene5112 biogeco3 v1.0 739
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene5397 biogeco3 v1.0 616
AutoFact: DNA-3-methyladenine glycosylase II [Arabidopsis thaliana] emb|CAB42917.1| putative DNA-3-methyladenine glycosidase [Arabidopsis thaliana] dbj|BAC43662.1| putative DNA-3-methyladenine glycosidase [Arabidopsis thaliana] gb|AAO63339.1| At3g50880 [Arabidopsis 0.0
FL-Next: tr=HhH-GPD base excision DNA repair family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: gpd base excision dna repair family protein 0.0
Internal
biog3_v1.0_unigene5710 biogeco3 v1.0 2607
AutoFact: putative DegP2 protease [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Protease Do-like 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protease do-like 9-like 0.0
Complete
biog3_v1.0_unigene7352 biogeco3 v1.0 430
AutoFact: protein DP-E2F-like 1 [Arabidopsis thaliana] emb|CAD10633.1| transcription factor E2Fe [Arabidopsis thaliana] gb|AEE78374.1| protein DP-E2F-like 1 [Arabidopsis thaliana] 2.0e-34
FL-Next: Isoform 2 of E2F transcription factor-like E2FE OS=Arabidopsis thaliana GN=E2FE 0.0
Blast2go: antagonist of e2f-dp complex 0.0
Internal
biog3_v1.0_unigene13454 biogeco3 v1.0 1760
AutoFact: putative DegP2 protease [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protease do-like 9-like 0.0
Putative Complete
biog3_v1.0_unigene14570 biogeco3 v1.0 190
AutoFact: DNA-3-methyladenine glycosylase, putative n=1 Tax=Ricinus communis RepID=B9S6F5_RICCO 1.0e-26
Blast2go: dna-3-methyladenine glycosylase 1 8.02557e-32
unknown
biog3_v1.0_unigene18878 biogeco3 v1.0 354
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein misato homolog 1-like 0.0
Internal
biog3_v1.0_unigene19049 biogeco3 v1.0 224
AutoFact: protease Do-like 2 [Arabidopsis thaliana] sp|O82261.2|DEGP2_ARATH RecName: Full=Protease Do-like 2, chloroplastic; Flags: Precursor gb|AAG41447.1|AF326865_1 putative DegP2 protease [Arabidopsis thaliana] gb|AAK14061.1|AF245171_1 DegP2 protease [Arabidopsi 0.0
FL-Next: sp=Protease Do-like 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protease do-like chloroplastic-like 0.0
Internal
biog3_v1.0_unigene19817 biogeco3 v1.0 239
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTY5_RICCO 0.0
FL-Next: Isoform 2 of ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
biog3_v1.0_unigene22964 biogeco3 v1.0 199
AutoFact: Unassigned protein
Blast2go: protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain