Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: CCT domain

Term: IPR010402  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene1150 biogeco3 v1.0 559
AutoFact: Pseudo response regulator n=3 Tax=Populus RepID=B9HM08_POPTR 0.0
Coding
biog3_v1.0_unigene1782 biogeco3 v1.0 1155
AutoFact: ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana] 0.0
FL-Next: Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 0.0
Blast2go: ubiquitin carboxyl-terminal hydrolase 12-like 0.0
C-terminus
biog3_v1.0_unigene3936 biogeco3 v1.0 412
AutoFact: CM0545.290.nc protein n=1 Tax=Lotus japonicus RepID=B0BLB2_LOTJA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
biog3_v1.0_unigene4643 biogeco3 v1.0 1166
AutoFact: CM0545.290.nc protein n=1 Tax=Lotus japonicus RepID=B0BLB2_LOTJA 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
biog3_v1.0_unigene4748 biogeco3 v1.0 460
AutoFact: CCT [Medicago truncatula] 5.0e-26
FL-Next: Isoform 2 of Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic OS=Arabidopsis thaliana GN=At4g31390 0.0
Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene4812 biogeco3 v1.0 995
AutoFact: Timing of CAB expression 1 protein n=1 Tax=Castanea sativa RepID=Q56TL2_CASSA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: two-component response regulator-like aprr1-like 0.0
Putative Complete
biog3_v1.0_unigene6271 biogeco3 v1.0 858
AutoFact: CM0545.290.nc protein n=1 Tax=Lotus japonicus RepID=B0BLB2_LOTJA 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 13; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
biog3_v1.0_unigene6365 biogeco3 v1.0 1763
AutoFact: zinc finger protein CONSTANS-LIKE 15 [Arabidopsis thaliana] sp|Q9C7E8.1|COL15_ARATH RecName: Full=Zinc finger protein CONSTANS-LIKE 15 gb|AAG51489.1|AC069471_20 CONSTANS family zinc finger protein, putative [Arabidopsis thaliana] gb|AAK59791.1| At1g28050/ 6.0e-39
FL-Next: sp=Zinc finger protein CONSTANS-LIKE 15; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger (b-box type) family protein 0.0
Complete
biog3_v1.0_unigene6596 biogeco3 v1.0 346
AutoFact: CM0545.290.nc protein n=1 Tax=Lotus japonicus RepID=B0BLB2_LOTJA 0.0
FL-Next: Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 0.0
Internal
biog3_v1.0_unigene6972 biogeco3 v1.0 1133
AutoFact: ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AAN13185.1| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AED91040.1| ubiq 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin carboxyl-terminal hydrolase 12-like 0.0
C-terminus
biog3_v1.0_unigene7002 biogeco3 v1.0 339
AutoFact: zinc finger protein [Pinus radiata] 0.0
FL-Next: tr=Constans-like protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: constans-like 1 0.0
Putative N-terminus
biog3_v1.0_unigene7103 biogeco3 v1.0 666
AutoFact: CM0545.290.nc protein n=1 Tax=Lotus japonicus RepID=B0BLB2_LOTJA 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 13; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
biog3_v1.0_unigene7724 biogeco3 v1.0 278
AutoFact: RVT_2 domain containing protein 1.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 0.0
Internal
biog3_v1.0_unigene7773 biogeco3 v1.0 2532
AutoFact: Pseudo response regulator n=3 Tax=Populus RepID=B9HM08_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
biog3_v1.0_unigene8140 biogeco3 v1.0 1027
AutoFact: putative ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana] 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 13; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ubiquitin carboxyl-terminal hydrolase 12-like 0.0
C-terminus
biog3_v1.0_unigene8288 biogeco3 v1.0 265
AutoFact: CM0545.290.nc protein n=1 Tax=Lotus japonicus RepID=B0BLB2_LOTJA 0.0
Coding
biog3_v1.0_unigene8327 biogeco3 v1.0 280
AutoFact: zinc finger protein [Pinus radiata] 0.0
FL-Next: tr=Constans-like 1; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: constans-like 1 0.0
C-terminus
biog3_v1.0_unigene8719 biogeco3 v1.0 277
AutoFact: putative ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana] 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 13; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ubiquitin carboxyl-terminal hydrolase 12-like 0.0
Internal
biog3_v1.0_unigene9663 biogeco3 v1.0 646
AutoFact: ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana] 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ubiquitin carboxyl-terminal hydrolase 12-like 0.0
Internal
biog3_v1.0_unigene10758 biogeco3 v1.0 409
AutoFact: ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AAN13185.1| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AED91040.1| ubiq 0.0
FL-Next: Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 0.0
Blast2go: ubiquitin carboxyl-terminal hydrolase 12 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain