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Assembly Name: biogeco3 v1.0

Name: Zinc finger, LSD1-type

Term: IPR005735  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene8132 biogeco3 v1.0 489
AutoFact: WS02926.CR_L20 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02926_L20 3', mRNA sequence. 0.0
FL-Next: tr=Os08g0223700 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: strawberry notch-like protein 0.0
C-terminus
biog3_v1.0_unigene8168 biogeco3 v1.0 1050
AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: metacaspase 1 0.0
N-terminus
biog3_v1.0_unigene9391 biogeco3 v1.0 267
AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: metacaspase 1 0.0
N-terminus
biog3_v1.0_unigene10655 biogeco3 v1.0 949
AutoFact: Probable polygalacturonase non-catalytic subunit JP650 n=3 Tax=Arabidopsis RepID=JP650_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase non-catalytic subunit jp650 0.0
Complete
biog3_v1.0_unigene11230 biogeco3 v1.0 1229
AutoFact: zinc finger protein LSD1 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Protein LOL3; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: lsd1-like protein 0.0
Complete
biog3_v1.0_unigene14342 biogeco3 v1.0 131
AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 0.0
Blast2go: metacaspase 1 0.0
unknown
biog3_v1.0_unigene16184 biogeco3 v1.0 188
AutoFact: Probable polygalacturonase non-catalytic subunit JP650 n=3 Tax=Arabidopsis RepID=JP650_ARATH 0.0
Blast2go: polygalacturonase non-catalytic subunit jp650 0.0
unknown
biog3_v1.0_unigene17239 biogeco3 v1.0 238
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: protein strawberry notch-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain