Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: Single-stranded nucleic acid binding R3H

Term: IPR001374  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene713 biogeco3 v1.0 1041
AutoFact: Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9RGU8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: potassium transporter 0.0
Complete
biog3_v1.0_unigene853 biogeco3 v1.0 236
AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 8.0e-07
Blast2go: probable atp-dependent rna helicase ythdc2-like 1.96745e-10
unknown
biog3_v1.0_unigene2332 biogeco3 v1.0 441
AutoFact: putative potasium transporter [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: potassium transporter 0.0
Putative C-terminus
biog3_v1.0_unigene2812 biogeco3 v1.0 289
AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 8.0e-07
Blast2go: probable atp-dependent rna helicase ythdc2-like 1.96745e-10
Putative coding
biog3_v1.0_unigene4179 biogeco3 v1.0 337
AutoFact: Unassigned protein
FL-Next: sp=NF-X1-type zinc finger protein NFXL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: nf-x1-type zinc finger protein nfxl1-like 0.0
Internal
biog3_v1.0_unigene4222 biogeco3 v1.0 412
AutoFact: putative potasium transporter [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: potassium transporter 0.0
Putative N-terminus
biog3_v1.0_unigene4506 biogeco3 v1.0 608
AutoFact: R3h domain containing protein, putative n=1 Tax=Ricinus communis RepID=B9SG72_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: r3h domain containing 0.0
N-terminus
biog3_v1.0_unigene6057 biogeco3 v1.0 1045
AutoFact: Potassium transporter HAK2p n=1 Tax=Mesembryanthemum crystallinum RepID=Q94KC6_MESCR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: potassium transporter 2 0.0
N-terminus
biog3_v1.0_unigene6337 biogeco3 v1.0 517
AutoFact: Potassium transporter HAK2p n=1 Tax=Mesembryanthemum crystallinum RepID=Q94KC6_MESCR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: potassium transporter 2 0.0
C-terminus
biog3_v1.0_unigene7730 biogeco3 v1.0 2230
AutoFact: R3h domain containing protein, putative n=1 Tax=Ricinus communis RepID=B9SG72_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: r3h domain containing 0.0
Complete
biog3_v1.0_unigene7740 biogeco3 v1.0 416
AutoFact: Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9RGU8_RICCO 0.0
FL-Next: Isoform 2 of Probable potassium transporter 2 OS=Oryza sativa subsp. japonica GN=HAK2 0.0
Blast2go: potassium transporter 0.0
Internal
biog3_v1.0_unigene8571 biogeco3 v1.0 1806
AutoFact: R3h domain containing protein, putative n=1 Tax=Ricinus communis RepID=B9SG72_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: r3h domain containing 0.0
C-terminus
biog3_v1.0_unigene8905 biogeco3 v1.0 696
AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 8.0e-07
Blast2go: probable atp-dependent rna helicase ythdc2-like 1.96745e-10
unknown
biog3_v1.0_unigene9741 biogeco3 v1.0 529
AutoFact: Potassium transporter HAK2p n=1 Tax=Mesembryanthemum crystallinum RepID=Q94KC6_MESCR 0.0
FL-Next: sp=Potassium transporter 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: potassium transporter 2 0.0
Internal
biog3_v1.0_unigene10053 biogeco3 v1.0 929
AutoFact: putative DNA-binding protein [Arabidopsis thaliana] gb|AAK76494.1| putative helicase [Arabidopsis thaliana] gb|AAM15033.1| putative helicase [Arabidopsis thaliana] gb|AAD17447.2| putative helicase [Arabidopsis thaliana] gb|AAM14300.1| putative helicase [A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-binding protein smubp-2-like 0.0
Internal
biog3_v1.0_unigene11830 biogeco3 v1.0 432
AutoFact: potassium transporter 1 [Arabidopsis thaliana] sp|O22397.2|POT1_ARATH RecName: Full=Potassium transporter 1; Short=AtKT1; Short=AtKUP1; Short=AtPOT1 gb|AAB87687.1| potassium transporter [Arabidopsis thaliana] gb|AAB88901.1| high-affinity potassium transpo 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: potassium transporter 0.0
Internal
biog3_v1.0_unigene14853 biogeco3 v1.0 448
AutoFact: potassium transporter 1 [Arabidopsis thaliana] sp|O22397.2|POT1_ARATH RecName: Full=Potassium transporter 1; Short=AtKT1; Short=AtKUP1; Short=AtPOT1 gb|AAB87687.1| potassium transporter [Arabidopsis thaliana] gb|AAB88901.1| high-affinity potassium transpo 0.0
FL-Next: Isoform 2 of Potassium transporter 1 OS=Arabidopsis thaliana GN=POT1 0.0
Blast2go: potassium transporter 0.0
Internal
biog3_v1.0_unigene15062 biogeco3 v1.0 184
AutoFact: putative DNA-binding protein [Arabidopsis thaliana] gb|AED94034.1| putative DNA-binding protein [Arabidopsis thaliana] 0.0
Blast2go: dna-binding protein smubp-2-like 0.0
unknown
biog3_v1.0_unigene15163 biogeco3 v1.0 432
AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: nuclear deih-boxhelicase 0.0
Internal
biog3_v1.0_unigene15696 biogeco3 v1.0 297
AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 0.0
FL-Next: sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable atp-dependent rna helicase ythdc2-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain