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Assembly Name: biogeco3 v1.0

Name: Nucleic acid binding, OB-fold, tRNA/helicase-type

Term: IPR004365  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene11789 biogeco3 v1.0 825
AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
biog3_v1.0_unigene13094 biogeco3 v1.0 683
AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: replication protein a 70 kda dna-binding subunit-like 0.0
Putative C-terminus
biog3_v1.0_unigene13632 biogeco3 v1.0 284
AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: replication protein a 70 kda dna-binding subunit-like 0.0
N-terminus
biog3_v1.0_unigene14008 biogeco3 v1.0 290
AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 0.0
Blast2go: protein 0.0
unknown
biog3_v1.0_unigene18732 biogeco3 v1.0 205
AutoFact: replication protein A 30kDa [Oryza sativa Japonica Group] 0.0
Blast2go: replication protein a 32 kda subunit 0.0
unknown
biog3_v1.0_unigene19335 biogeco3 v1.0 276
AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
Blast2go: replication protein a 70 kda dna-binding subunit-like 0.0
unknown
biog3_v1.0_unigene19978 biogeco3 v1.0 272
AutoFact: asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb|AAD4 0.0
FL-Next: sp=Asparaginyl-tRNA synthetase, cytoplasmic 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: asparaginyl-trna cytoplasmic 1-like 0.0
Internal
biog3_v1.0_unigene21105 biogeco3 v1.0 345
AutoFact: Lysyl-tRNA synthetase n=1 Tax=Oryza sativa Japonica Group RepID=Q6K1T2_ORYSJ 0.0
FL-Next: sp=Lysyl-tRNA synthetase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: lysyl-trna synthetase 0.0
Internal
biog3_v1.0_unigene21793 biogeco3 v1.0 357
AutoFact: putative aspartate--tRNA ligase [Arabidopsis thaliana] emb|CAB80093.1| putative aspartate--tRNA ligase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: aspartyl-trna synthetase 0.0
C-terminus
biog3_v1.0_unigene22089 biogeco3 v1.0 477
AutoFact: asparaginyl-tRNA synthetase [Arabidopsis thaliana] sp|O48593.3|SYNO_ARATH RecName: Full=Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial; AltName: Full=Asparagine--tRNA ligase; Short=AsnRS; Flags: Precursor gb|AAL84964.1| AT4g17300/dl4685w [Arabid 0.0
FL-Next: sp=Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene24769 biogeco3 v1.0 178
AutoFact: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] ref|NP_194863.4| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] dbj|BAC43211.1| unknown protein [Arabidops 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein 0.0
Internal
biog3_v1.0_unigene26014 biogeco3 v1.0 289
AutoFact: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] emb|CAB87691.1| putative protein [Arabidopsis thaliana] gb|AAM13183.1| putative protein [Arabidopsis thaliana] gb|AAP68292.1| At5g11730 [Arabidopsis thaliana 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain