Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: tRNA-binding domain

Term: IPR002547  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene89 biogeco3 v1.0 433
AutoFact: methionyl-tRNA synthetase (ISS) [Ostreococcus tauri] emb|CAL49998.1| methionyl-tRNA synthetase (ISS) [Ostreococcus tauri] 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methionyl-trna synthetase 0.0
N-terminus
biog3_v1.0_unigene953 biogeco3 v1.0 417
AutoFact: methionyl-tRNA synthetase (ISS) [Ostreococcus tauri] emb|CAL49998.1| methionyl-tRNA synthetase (ISS) [Ostreococcus tauri] 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methionyl-trna synthetase 0.0
C-terminus
biog3_v1.0_unigene2002 biogeco3 v1.0 783
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methionyl-trna synthetase 0.0
Putative C-terminus
biog3_v1.0_unigene5230 biogeco3 v1.0 563
AutoFact: Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TK03_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 5b 0.0
C-terminus
biog3_v1.0_unigene6051 biogeco3 v1.0 363
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methionyl-trna synthetase 0.0
Internal
biog3_v1.0_unigene6127 biogeco3 v1.0 672
AutoFact: Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] emb|CAB75817.1| putative protein [Arabidopsis thaliana] gb|AAK76594.1| unknown protein [Arabidopsis thaliana] gb|AAM44914.1| unknown protein [Arabidopsis thaliana] gb|AAM63861.1| unknown [A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
biog3_v1.0_unigene7282 biogeco3 v1.0 1304
AutoFact: Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TK03_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 5b 0.0
N-terminus
biog3_v1.0_unigene8572 biogeco3 v1.0 465
AutoFact: Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TK03_PHYPA 0.0
Blast2go: eukaryotic translation initiation factor 5b 0.0
Coding
biog3_v1.0_unigene8900 biogeco3 v1.0 357
AutoFact: OB-fold nucleic acid binding domain-containing protein n=2 Tax=Arabidopsis RepID=Q93VB0_ARATH 0.0
FL-Next: sp=Probable methionyl-tRNA synthetase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene9943 biogeco3 v1.0 528
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methionyl-trna synthetase 0.0
Internal
biog3_v1.0_unigene11678 biogeco3 v1.0 410
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
FL-Next: sp=Probable methionyl-tRNA synthetase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: methionyl-trna synthetase 0.0
Internal
biog3_v1.0_unigene11700 biogeco3 v1.0 934
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methionyl-trna synthetase 0.0
Internal
biog3_v1.0_unigene13257 biogeco3 v1.0 259
AutoFact: Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] emb|CAB75817.1| putative protein [Arabidopsis thaliana] gb|AAK76594.1| unknown protein [Arabidopsis thaliana] gb|AAM44914.1| unknown protein [Arabidopsis thaliana] gb|AAM63861.1| unknown [A 0.0
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Blast2go: protein 0.0
Putative C-terminus
biog3_v1.0_unigene22484 biogeco3 v1.0 247
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
Blast2go: methionyl-trna synthetase 0.0
unknown
biog3_v1.0_unigene24794 biogeco3 v1.0 216
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Blast2go: aminoacyl trna synthase complex-interacting multifunctional protein 1-like 1.56861e-13
C-terminus
biog3_v1.0_unigene26152 biogeco3 v1.0 84
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
Blast2go: methionyl-trna synthetase 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain