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Assembly Name: biogeco3 v1.0

Name: RNA polymerase sigma factor 54, interaction

Term: IPR002078  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene12027 biogeco3 v1.0 312
AutoFact: Ras-related protein Rab-2-B n=15 Tax=Magnoliophyta RepID=RAB2B_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ras-related protein rab-2-a 0.0
N-terminus
biog3_v1.0_unigene15278 biogeco3 v1.0 473
AutoFact: PREDICTED: similar to midasin-related n=1 Tax=Vitis vinifera RepID=UPI00019863A5 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
Putative N-terminus
biog3_v1.0_unigene15394 biogeco3 v1.0 273
AutoFact: Ras-related protein RABA2a [Arabidopsis thaliana] sp|O04486.1|RAA2A_ARATH RecName: Full=Ras-related protein RABA2a; Short=AtRABA2a; AltName: Full=Ras-related protein Rab11C; Short=AtRab11C; Flags: Precursor gb|AAB60720.1| Strong similarity to A. thaliana 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rab11 -family small gtpase 0.0
Internal
biog3_v1.0_unigene17019 biogeco3 v1.0 123
AutoFact: GTPase Rab1 n=3 Tax=Pinaceae RepID=B0LXL9_9CONI 0.0
Blast2go: rab family gtpase 0.0
unknown
biog3_v1.0_unigene17445 biogeco3 v1.0 250
AutoFact: GTP-binding protein yptv3, putative n=1 Tax=Ricinus communis RepID=B9T5U9_RICCO 0.0
FL-Next: sp=Uncharacterized GTP-binding protein At5g64813; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: uncharacterized gtp-binding protein at5g64813-like 0.0
Internal
biog3_v1.0_unigene18591 biogeco3 v1.0 213
AutoFact: Rab2/RabB-family small GTPase n=4 Tax=Physcomitrella patens subsp. patens RepID=A9SC62_PHYPA 0.0
Blast2go: rab2 -family small gtpase 0.0
unknown
biog3_v1.0_unigene19244 biogeco3 v1.0 238
AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rab family gtpase 0.0
C-terminus
biog3_v1.0_unigene19998 biogeco3 v1.0 381
AutoFact: Ras-related protein Rab-18 n=4 Tax=Poaceae RepID=B6TCF9_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ras-related protein rab-18 0.0
N-terminus
biog3_v1.0_unigene21308 biogeco3 v1.0 192
AutoFact: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9RL74_RICCO 0.0
Blast2go: protein phosphatase 0.0
unknown
biog3_v1.0_unigene23036 biogeco3 v1.0 343
AutoFact: Ras-related protein Rab-2-B n=15 Tax=Magnoliophyta RepID=RAB2B_MAIZE 0.0
Blast2go: ras-related protein rab-2-a 0.0
unknown
biog3_v1.0_unigene24070 biogeco3 v1.0 191
AutoFact: RecName: Full=Ras-related protein Rab2BV emb|CAA89049.1| small G protein [Beta vulgaris subsp. vulgaris] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rab11 -family small gtpase 0.0
Internal
biog3_v1.0_unigene25380 biogeco3 v1.0 248
AutoFact: Ras-related protein RABA4d n=2 Tax=Arabidopsis RepID=RAA4D_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rab11 -family small gtpase 0.0
Internal
biog3_v1.0_unigene26111 biogeco3 v1.0 161
AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rab family gtpase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain