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Assembly Name: biogeco3 v1.0

Name: Signal recognition particle, SRP54 subunit, GTPase

Term: IPR000897  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene17101 biogeco3 v1.0 263
AutoFact: Transcription factor AP2-EREBP n=1 Tax=Lotus japonicus RepID=B3IX32_LOTJA 7.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ethylene-responsive transcription factor 1a 0.0
Putative C-terminus
biog3_v1.0_unigene17151 biogeco3 v1.0 117
AutoFact: signal recognition particle receptor subunit alpha [Arabidopsis thaliana] emb|CAB79778.1| signal recognition particle receptor-like protein [Arabidopsis thaliana] gb|AAL57699.1| AT4g30600/F17I23_60 [Arabidopsis thaliana] gb|AAM91442.1| AT4g30600/F17I23_60 0.0
Blast2go: signal recognition particle receptor subunit alpha 0.0
unknown
biog3_v1.0_unigene17855 biogeco3 v1.0 466
AutoFact: Inositol or phosphatidylinositol kinase, putative n=1 Tax=Ricinus communis RepID=B9RLG3_RICCO 0.0
FL-Next: sp=Probable phosphatidylinositol 4-kinase type 2-beta At1g26270; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable phosphatidylinositol 4-kinase type 2-beta at1g26270-like 0.0
N-terminus
biog3_v1.0_unigene17976 biogeco3 v1.0 287
AutoFact: Sentrin/sumo-specific protease, senp8, putative n=1 Tax=Ricinus communis RepID=B9T1Y6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ulp1 protease family protein 0.0
Internal
biog3_v1.0_unigene18258 biogeco3 v1.0 435
AutoFact: serine protease-like protein [Nicotiana tabacum] 0.0
FL-Next: sp=Xylem serine proteinase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: subtilisin-like protease-like 0.0
Internal
biog3_v1.0_unigene18795 biogeco3 v1.0 195
AutoFact: serine protease-like protein [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: subtilisin-like protease-like 0.0
Internal
biog3_v1.0_unigene18901 biogeco3 v1.0 240
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9I6D4_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: tata-binding protein-associated factor 172-like 0.0
Internal
biog3_v1.0_unigene20036 biogeco3 v1.0 510
AutoFact: Inositol or phosphatidylinositol kinase, putative n=1 Tax=Ricinus communis RepID=B9RLG3_RICCO 0.0
FL-Next: sp=Probable phosphatidylinositol 4-kinase type 2-beta At1g26270; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable phosphatidylinositol 4-kinase type 2-beta at1g26270-like 0.0
Internal
biog3_v1.0_unigene20815 biogeco3 v1.0 200
AutoFact: DUF3535 domain containing protein 0.0001
FL-Next: tr=SNF2 superfamily chromatin remodeling protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: tata box binding protein associated factor-like protein 0.0
Internal
biog3_v1.0_unigene20903 biogeco3 v1.0 331
AutoFact: putative valyl-tRNA synthetase [Oryza sativa Japonica Group] 8.0e-36
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 1.79144e-37
Internal
biog3_v1.0_unigene21010 biogeco3 v1.0 321
AutoFact: Xylem serine proteinase 1, putative n=1 Tax=Ricinus communis RepID=B9SHW1_RICCO 0.0
FL-Next: tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: subtilisin-like protease-like 0.0
Internal
biog3_v1.0_unigene21293 biogeco3 v1.0 410
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9I6D4_POPTR 0.0
FL-Next: sp=Putative chromatin-remodeling complex ATPase chain; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: tata box binding protein associated factor-like protein 0.0
Internal
biog3_v1.0_unigene22796 biogeco3 v1.0 309
AutoFact: Inositol or phosphatidylinositol kinase, putative n=1 Tax=Ricinus communis RepID=B9RLG3_RICCO 0.0
FL-Next: sp=Probable phosphatidylinositol 4-kinase type 2-beta At1g26270; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable phosphatidylinositol 4-kinase type 2-beta at1g26270-like 0.0
C-terminus
biog3_v1.0_unigene22948 biogeco3 v1.0 350
AutoFact: Sentrin/sumo-specific protease, senp8, putative n=1 Tax=Ricinus communis RepID=B9T1Y6_RICCO 0.0
Blast2go: ulp1 protease family protein 0.0
unknown
biog3_v1.0_unigene24218 biogeco3 v1.0 204
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9I6D4_POPTR 0.0
FL-Next: tr=TATA-binding protein-associated factor MOT1, putative; Ricinus communis (Castor bean). 0.0
Blast2go: tata-binding protein-associated factor 172-like 0.0
Internal
biog3_v1.0_unigene24917 biogeco3 v1.0 399
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ran-binding protein 0.0
N-terminus
biog3_v1.0_unigene25089 biogeco3 v1.0 462
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: ran-binding protein 0.0
Internal
biog3_v1.0_unigene25522 biogeco3 v1.0 559
AutoFact: signal recognition particle subunit [Arabidopsis thaliana] sp|P37107.1|SR54C_ARATH RecName: Full=Signal recognition particle 54 kDa protein, chloroplastic; Short=54 chloroplast protein; Short=54CP; Short=SRP54; AltName: Full=FFC; Flags: Precursor emb|CAA7 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: signal recognition particle 54 kda chloroplastic-like 0.0
N-terminus
biog3_v1.0_unigene26253 biogeco3 v1.0 304
AutoFact: ATP binding protein n=2 Tax=Andropogoneae RepID=B6T888_MAIZE 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain