Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: biogeco3 v1.0

Name: Tubulin, conserved site

Term: IPR017975  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene62 biogeco3 v1.0 332
• AutoFact: Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: beta chain 0.0
Internal
biog3_v1.0_unigene114 biogeco3 v1.0 339
• AutoFact: Predicted protein n=2 Tax=Physcomitrella patens RepID=A9TKM8_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative C-terminus
biog3_v1.0_unigene118 biogeco3 v1.0 383
• AutoFact: Dof zinc finger protein 12 n=1 Tax=Hordeum vulgare subsp. vulgare RepID=A5HWG1_HORVD 4.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dof zinc finger protein 2.41959e-40
N-terminus
biog3_v1.0_unigene178 biogeco3 v1.0 1626
• AutoFact: Tubulin alpha-2/alpha-4 chain n=384 Tax=Eukaryota RepID=TBA2_ARATH 0.0
• FL-Next: tr=Alpha tubulin 1; Pseudotsuga menziesii var. menziesii. 0.0
• Blast2go: alpha tubulin 1 0.0
Complete
biog3_v1.0_unigene548 biogeco3 v1.0 381
• AutoFact: protein kinase [Spinacia oleracea] 0.0
• FL-Next: sp=Phototropin-1A; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: phototropin 2 0.0
Internal
biog3_v1.0_unigene1551 biogeco3 v1.0 384
• AutoFact: TPA_inf: class IV HD-Zip protein HDZ43 [Physcomitrella patens] 5.0e-32
• FL-Next: tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Blast2go: homeobox-leucine zipper protein anthocyaninless 2-like 7.64948e-36
N-terminus
biog3_v1.0_unigene1660 biogeco3 v1.0 1457
• AutoFact: Nucleic acid binding NABP [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pumilio homolog 2-like 0.0
Complete
biog3_v1.0_unigene1831 biogeco3 v1.0 645
• AutoFact: Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SWQ3_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein kinase 0.0
C-terminus
biog3_v1.0_unigene1980 biogeco3 v1.0 287
• AutoFact: Glycosyltransferase n=2 Tax=Solanum RepID=Q50HV0_SOLLC 0.0
• FL-Next: sp=Probable beta-1,4-xylosyltransferase IRX14H; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: probable beta- -xylosyltransferase irx14h-like 0.0
Internal
biog3_v1.0_unigene2069 biogeco3 v1.0 381
• AutoFact: Predicted protein n=2 Tax=Physcomitrella patens RepID=A9SU35_PHYPA 0.0
• Blast2go: protein 0.0
Coding
biog3_v1.0_unigene2425 biogeco3 v1.0 628
• AutoFact: Os01g0844800 protein n=3 Tax=Oryza sativa RepID=Q0JHT2_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pumilio homolog 2-like 0.0
Complete
biog3_v1.0_unigene2605 biogeco3 v1.0 292
• AutoFact: Reticulon-like protein B23 n=1 Tax=Arabidopsis thaliana RepID=RTNLU_ARATH 5.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: reticulon-like protein b22 8.47156e-34
Internal
biog3_v1.0_unigene3070 biogeco3 v1.0 466
• AutoFact: Nucleic acid binding NABP [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: pumilio homolog 2-like 0.0
Internal
biog3_v1.0_unigene3210 biogeco3 v1.0 671
• AutoFact: Dof domain zinc finger DNA-binding protein n=1 Tax=Picea abies RepID=Q14DX9_PICAB 5.0e-31
• FL-Next: tr=Dof domain zinc finger DNA-binding protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Blast2go: f-box family protein 6.92407e-34
N-terminus
biog3_v1.0_unigene3453 biogeco3 v1.0 719
• AutoFact: Squamosa promoter-binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8V3_RICCO 0.0
• FL-Next: sp=Squamosa promoter-binding-like protein 15; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: squamosa promoter-binding-like protein 14-like 0.0
C-terminus
biog3_v1.0_unigene3686 biogeco3 v1.0 352
• AutoFact: protein N-terminal asparagine amidohydrolase family protein [Arabidopsis thaliana] gb|AAC16088.2| expressed protein [Arabidopsis thaliana] dbj|BAC42174.1| unknown protein [Arabidopsis thaliana] gb|AAO50636.1| unknown protein [Arabidopsis thaliana] gb|AEC1 0.0
• FL-Next: tr=N-terminal asparagine amidohydrolase family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
• Blast2go: protein n-terminal asparagine amidohydrolase 0.0
Internal
biog3_v1.0_unigene3866 biogeco3 v1.0 609
• AutoFact: Nucleic acid binding NABP [Medicago truncatula] 0.0
• FL-Next: sp=Pumilio homolog 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: pumilio homolog 2-like 0.0
Internal
biog3_v1.0_unigene3934 biogeco3 v1.0 356
• AutoFact: SWI/SNF complex subunit SWI3B [Arabidopsis thaliana] sp|Q84JG2.1|SWI3B_ARATH RecName: Full=SWI/SNF complex subunit SWI3B; Short=AtSWI3B; AltName: Full=Transcription regulatory protein SWI3B gb|AAO42112.1| putative SWI/SNF complex subunit SW13 [Arabidopsis 1.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: swi snf complex subunit swi3b 0.0
Internal
biog3_v1.0_unigene4070 biogeco3 v1.0 592
• AutoFact: Squamosa promoter-binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8V3_RICCO 0.0
• FL-Next: sp=Squamosa promoter-binding-like protein 14; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: squamosa promoter-binding-like protein 14-like 0.0
Internal
biog3_v1.0_unigene4104 biogeco3 v1.0 116
• AutoFact: Tubulin beta-2/beta-3 chain n=340 Tax=Eukaryota RepID=TBB2_ARATH 0.0
• Blast2go: tubulin beta chain 0.0
unknown

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain