Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: biogeco3 v1.0

Name: SWIRM domain

Term: IPR007526  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene2529 biogeco3 v1.0 466
AutoFact: Lysine-specific histone demethylase, putative n=1 Tax=Ricinus communis RepID=B9R844_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lysine-specific histone demethylase-like protein 0.0
N-terminus
biog3_v1.0_unigene3210 biogeco3 v1.0 671
AutoFact: Dof domain zinc finger DNA-binding protein n=1 Tax=Picea abies RepID=Q14DX9_PICAB 5.0e-31
FL-Next: tr=Dof domain zinc finger DNA-binding protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: f-box family protein 6.92407e-34
N-terminus
biog3_v1.0_unigene3396 biogeco3 v1.0 716
AutoFact: Lysine-specific histone demethylase, putative n=1 Tax=Ricinus communis RepID=B9R844_RICCO 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lysine-specific histone demethylase-like protein 0.0
C-terminus
biog3_v1.0_unigene3934 biogeco3 v1.0 356
AutoFact: SWI/SNF complex subunit SWI3B [Arabidopsis thaliana] sp|Q84JG2.1|SWI3B_ARATH RecName: Full=SWI/SNF complex subunit SWI3B; Short=AtSWI3B; AltName: Full=Transcription regulatory protein SWI3B gb|AAO42112.1| putative SWI/SNF complex subunit SW13 [Arabidopsis 1.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swi snf complex subunit swi3b 0.0
Internal
biog3_v1.0_unigene4295 biogeco3 v1.0 498
AutoFact: Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana] emb|CAB87783.1| putative protein [Arabidopsis thaliana] dbj|BAF01166.1| hypothetical protein [Arabidopsis thaliana] gb|AED92035.1| Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana] 6.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: surfeit locus protein 2 0.0
N-terminus
biog3_v1.0_unigene5168 biogeco3 v1.0 537
AutoFact: Transcriptional adapter ADA2 n=9 Tax=Poaceae RepID=TADA2_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcriptional adapter ada2-like 0.0
Internal
biog3_v1.0_unigene8826 biogeco3 v1.0 315
AutoFact: pfam02701, zf-Dof, Dof domain, zinc finger 2.0e-38
FL-Next: tr=Dof-type zinc finger protein 15; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: dof zinc finger 0.0
Internal
biog3_v1.0_unigene8849 biogeco3 v1.0 267
AutoFact: SWI/SNF complex subunit SWI3A [Arabidopsis thaliana] sp|Q8W475.1|SWI3A_ARATH RecName: Full=SWI/SNF complex subunit SWI3A; Short=AtSWI3A; AltName: Full=Transcription regulatory protein SWI3A gb|AAL32872.1| putative SWI/SNF family transcription activator [A 0.0
FL-Next: sp=SWI/SNF complex subunit SWI3A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: swi snf complex subunit swi3a 0.0
Internal
biog3_v1.0_unigene10085 biogeco3 v1.0 713
AutoFact: Dof transcription factor n=1 Tax=Pinus pinaster RepID=B0BCH1_PINPS 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: f-box family protein 0.0
C-terminus
biog3_v1.0_unigene10391 biogeco3 v1.0 406
AutoFact: Lysine-specific histone demethylase, putative n=1 Tax=Ricinus communis RepID=B9R844_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lysine-specific histone demethylase-like protein 0.0
Internal
biog3_v1.0_unigene13239 biogeco3 v1.0 390
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9T0T3_RICCO 2.0e-32
FL-Next: tr=Dof transcription factor; Pinus pinaster (Maritime pine). 0.0
Blast2go: dof zinc finger protein 8.13057e-36
Internal
biog3_v1.0_unigene13759 biogeco3 v1.0 419
AutoFact: SWI/SNF complex subunit SWI3B [Arabidopsis thaliana] sp|Q84JG2.1|SWI3B_ARATH RecName: Full=SWI/SNF complex subunit SWI3B; Short=AtSWI3B; AltName: Full=Transcription regulatory protein SWI3B gb|AAO42112.1| putative SWI/SNF complex subunit SW13 [Arabidopsis 1.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swi snf complex subunit swi3b 0.0
Internal
biog3_v1.0_unigene17218 biogeco3 v1.0 379
AutoFact: Transcriptional adapter ADA2 n=9 Tax=Poaceae RepID=TADA2_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcriptional adapter ada2-like 0.0
Putative N-terminus
biog3_v1.0_unigene18061 biogeco3 v1.0 207
AutoFact: SWI/SNF complex subunit SWI3C [Arabidopsis thaliana] sp|Q9XI07.1|SWI3C_ARATH RecName: Full=SWI/SNF complex subunit SWI3C; Short=AtSWI3C; AltName: Full=Transcription regulatory protein SWI3C gb|AAD41423.1|AC007727_12 Contains similarity to gb|AF033823 moir 0.0
FL-Next: sp=SWI/SNF complex subunit SWI3C; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: swi snf complex subunit swi3c-like 0.0
Internal
biog3_v1.0_unigene18542 biogeco3 v1.0 258
AutoFact: SWI/SNF complex subunit SWI3B [Arabidopsis thaliana] sp|Q84JG2.1|SWI3B_ARATH RecName: Full=SWI/SNF complex subunit SWI3B; Short=AtSWI3B; AltName: Full=Transcription regulatory protein SWI3B gb|AAO42112.1| putative SWI/SNF complex subunit SW13 [Arabidopsis 1.0e-39
FL-Next: sp=SWI/SNF complex subunit SWI3B; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: swi snf complex subunit swi3b 0.0
Internal
biog3_v1.0_unigene21014 biogeco3 v1.0 186
AutoFact: Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana] emb|CAB87783.1| putative protein [Arabidopsis thaliana] dbj|BAF01166.1| hypothetical protein [Arabidopsis thaliana] gb|AED92035.1| Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana] 6.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: surfeit locus protein 2 0.0
Internal
biog3_v1.0_unigene22270 biogeco3 v1.0 314
AutoFact: SWI/SNF complex subunit SWI3C [Arabidopsis thaliana] sp|Q9XI07.1|SWI3C_ARATH RecName: Full=SWI/SNF complex subunit SWI3C; Short=AtSWI3C; AltName: Full=Transcription regulatory protein SWI3C gb|AAD41423.1|AC007727_12 Contains similarity to gb|AF033823 moir 2.99878e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swi snf complex subunit swi3c-like 0.0
Internal
biog3_v1.0_unigene24431 biogeco3 v1.0 288
AutoFact: Dof transcription factor n=1 Tax=Pinus pinaster RepID=B0BCH1_PINPS 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: f-box family protein 0.0
N-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain