Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: Spen paralogue and orthologue SPOC, C-terminal

Term: IPR012921  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene697 biogeco3 v1.0 369
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE83159.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene1220 biogeco3 v1.0 328
AutoFact: Ubiquitin system component Cue protein [Arabidopsis thaliana] gb|AEE30873.1| Ubiquitin system component Cue protein [Arabidopsis thaliana] 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Trifolium repens (Creeping white clover). 0.0
Blast2go: ubiquitin system component cue protein 6.34634e-37
Internal
biog3_v1.0_unigene2287 biogeco3 v1.0 680
AutoFact: RNA recognition motif-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SU08_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: flowering time control protein fpa 0.0
Internal
biog3_v1.0_unigene7441 biogeco3 v1.0 349
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SEZ1_RICCO 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: flowering time control protein fpa 0.0
Internal
biog3_v1.0_unigene9651 biogeco3 v1.0 689
AutoFact: FPA (Fragment) n=1 Tax=Pisum sativum RepID=Q52ZH7_PEA 6.00036e-42
Blast2go: flowering time control protein fpa 7.00649e-45
Coding
biog3_v1.0_unigene15885 biogeco3 v1.0 293
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE83159.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene18205 biogeco3 v1.0 273
AutoFact: FPA (Fragment) n=1 Tax=Pisum sativum RepID=Q52ZH7_PEA 6.00036e-42
FL-Next: Isoform 3 of Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA 0.0
Blast2go: flowering time control protein fpa 7.00649e-45
C-terminus
biog3_v1.0_unigene23378 biogeco3 v1.0 470
AutoFact: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Arabidopsis thaliana] sp|Q67ZE1.2|HSDD2_ARATH RecName: Full=3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2; Short=At3BETAHSD/D2; AltName: Full=4alpha-carboxysterol-C3-dehydrogenase/C4 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 3beta-hydroxysteroid-dehydrogenase decarboxylase isoform 2 0.0
Internal
biog3_v1.0_unigene23637 biogeco3 v1.0 521
AutoFact: SPOC multi-domain protein 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: spoc domain transcription elongation factor s-ii protein 0.0
Putative C-terminus
biog3_v1.0_unigene23828 biogeco3 v1.0 406
AutoFact: RNA recognition motif-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SU08_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: flowering time control protein fpa 0.0
Internal
biog3_v1.0_unigene24686 biogeco3 v1.0 351
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SEZ1_RICCO 2.0e-09
Blast2go: flowering time control protein fpa 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain