Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: HTH domain AraC-type, conserved site

Term: IPR018062  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene3778 biogeco3 v1.0 463
AutoFact: nudix hydrolase 3 [Arabidopsis thaliana] sp|Q8L831.1|NUDT3_ARATH RecName: Full=Nudix hydrolase 3; Short=AtNUDT3 gb|AAM53332.1| unknown protein [Arabidopsis thaliana] gb|AAN15461.1| unknown protein [Arabidopsis thaliana] gb|AEE36287.1| nudix hydrolase 3 [A 0.0
FL-Next: sp=Nudix hydrolase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: nudix hydrolase 3-like 0.0
Internal
biog3_v1.0_unigene3795 biogeco3 v1.0 475
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene3885 biogeco3 v1.0 349
AutoFact: subtilisin-like proteinase-like [Oryza sativa Japonica Group] dbj|BAB90087.1| subtilisin-like proteinase-like [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: subtilisin-like protease-like 0.0
Internal
biog3_v1.0_unigene4208 biogeco3 v1.0 511
AutoFact: Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9R6R4_RICCO 0.0
FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: receptor protein kinase clavata1 0.0
Internal
biog3_v1.0_unigene4270 biogeco3 v1.0 391
AutoFact: E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb|AAL91211.1| unknown protein [Ar 0.0
FL-Next: sp=E3 ubiquitin-protein ligase BRE1-like 2; Oryza sativa subsp. japonica (Rice). 0.0
Internal
biog3_v1.0_unigene4584 biogeco3 v1.0 499
AutoFact: WS00722.B21_A05 WS-PS-N-A-8 Picea glauca cDNA clone WS00722_A05 3', mRNA sequence. 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: uncharacterized protein 0.0
Internal
biog3_v1.0_unigene4697 biogeco3 v1.0 617
AutoFact: 4-coumarate:coenzyme A ligase 1 n=4 Tax=Funariaceae RepID=B7SB99_PHYPA 0.0
FL-Next: tr=4-coumarate:CoA ligase; Pinus massoniana. 0.0
Blast2go: 4-coumarate: ligase 0.0
Internal
biog3_v1.0_unigene5293 biogeco3 v1.0 1086
AutoFact: Glycerate oxidase n=1 Tax=Pinus pinaster RepID=F4MKM3_PINPS 0.0
FL-Next: tr=Glycerate oxidase; Pinus pinaster (Maritime pine). 0.0
Blast2go: aldolase-type tim barrel family protein 0.0
C-terminus
biog3_v1.0_unigene5482 biogeco3 v1.0 280
AutoFact: Receptor-like protein kinase n=2 Tax=Glycine max RepID=C6ZRW9_SOYBN 0.0
Blast2go: leucine-rich receptor-like protein kinase bam1 0.0
unknown
biog3_v1.0_unigene5639 biogeco3 v1.0 347
AutoFact: Alanyl-tRNA synthetase n=4 Tax=Arabidopsis RepID=SYA_ARATH 0.0
FL-Next: sp=Alanyl-tRNA synthetase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: alanyl-trna synthetase 0.0
Internal
biog3_v1.0_unigene5848 biogeco3 v1.0 1401
AutoFact: AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9R8J7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: opc-8:0 ligase1 0.0
Putative Complete
biog3_v1.0_unigene6008 biogeco3 v1.0 810
AutoFact: Alanyl-tRNA synthetase n=4 Tax=Arabidopsis RepID=SYA_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: alanyl-trna synthetase 0.0
Putative C-terminus
biog3_v1.0_unigene6091 biogeco3 v1.0 1284
AutoFact: Multidrug/pheromone exporter, MDR family, ABC transporter family n=5 Tax=core eudicotyledons RepID=B9IJV9_POPTR 0.0
FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
Blast2go: abc transporter b family member 19-like 0.0
Putative C-terminus
biog3_v1.0_unigene6351 biogeco3 v1.0 430
AutoFact: AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9S209_RICCO 0.0
FL-Next: tr=4-coumarate:CoA ligase; Pinus massoniana. 0.0
Blast2go: 4-coumarate: ligase 0.0
N-terminus
biog3_v1.0_unigene6388 biogeco3 v1.0 721
AutoFact: Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9T173_RICCO 0.0
FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: receptor-like protein kinase 0.0
Internal
biog3_v1.0_unigene7106 biogeco3 v1.0 650
AutoFact: AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9S209_RICCO 0.0
FL-Next: tr=4-coumarate:CoA ligase; Pinus massoniana. 0.0
Blast2go: 4-coumarate: ligase 0.0
Internal
biog3_v1.0_unigene7507 biogeco3 v1.0 592
AutoFact: Acyl:coa ligase n=1 Tax=Populus trichocarpa RepID=B9GQ39_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: acyl:coa ligase 0.0
Internal
biog3_v1.0_unigene7729 biogeco3 v1.0 316
AutoFact: Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9T173_RICCO 0.0
FL-Next: sp=Receptor-like protein kinase 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: receptor-like protein kinase 0.0
N-terminus
biog3_v1.0_unigene7821 biogeco3 v1.0 1399
AutoFact: root uracil permease 1 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleobase-ascorbate transporter 6-like 0.0
C-terminus
biog3_v1.0_unigene8195 biogeco3 v1.0 935
AutoFact: Subtilisin-like protease n=2 Tax=Arabidopsis RepID=SUBL_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: subtilisin-like protease 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain