Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: WD40-repeat-containing domain

Term: IPR017986  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene24323 biogeco3 v1.0 381
AutoFact: zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] dbj|BAB11046.1| unnamed protein product [Arabidopsis thaliana] gb|AED96154.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] 0.0
Blast2go: zinc finger ccch domain-containing protein 48 0.0
unknown
biog3_v1.0_unigene24455 biogeco3 v1.0 314
AutoFact: SPA1-related 4 protein [Arabidopsis thaliana] ref|NP_849802.1| SPA1-related 4 protein [Arabidopsis thaliana] sp|Q94BM7.1|SPA4_ARATH RecName: Full=Protein SPA1-RELATED 4 gb|AAK64180.1| putative phytochrome A supressor spa1 protein [Arabidopsis thaliana] gb 4.2039e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein spa1-related 3-like 0.0
Internal
biog3_v1.0_unigene24459 biogeco3 v1.0 202
AutoFact: PREDICTED: similar to neutral sphingomyelinase (n-smase) activation associated factor fan [Nasonia vitripennis] 4.0e-18
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: beach domain-containing protein 0.0
Internal
biog3_v1.0_unigene24512 biogeco3 v1.0 282
AutoFact: Cellulose synthase n=1 Tax=Pinus radiata RepID=Q4VWW7_PINRA 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Blast2go: cellulose synthase 0.0
Internal
biog3_v1.0_unigene24566 biogeco3 v1.0 279
AutoFact: protein transport protein SEC31 [Arabidopsis thaliana] gb|AAM20553.1| putative protein [Arabidopsis thaliana] gb|AAP37794.1| At3g63460 [Arabidopsis thaliana] gb|AEE80486.1| protein transport protein SEC31 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein transport protein sec31 0.0
Internal
biog3_v1.0_unigene24698 biogeco3 v1.0 762
AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-07
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: wd repeat-containing 0.0
Internal
biog3_v1.0_unigene24840 biogeco3 v1.0 852
AutoFact: cellulose synthase 6 [Eucalyptus grandis] 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Blast2go: cellulose synthase 0.0
Internal
biog3_v1.0_unigene24904 biogeco3 v1.0 119
AutoFact: cell cycle arrest protein BUB3 [Arabidopsis thaliana] dbj|BAB02543.1| mitotic checkpoint protein [Arabidopsis thaliana] gb|AAM64953.1| mitotic checkpoint protein, putative [Arabidopsis thaliana] gb|AAO42274.1| putative mitotic checkpoint protein [Arabidop 0.0
Blast2go: mitotic checkpoint protein 0.0
unknown
biog3_v1.0_unigene24982 biogeco3 v1.0 456
AutoFact: WD-repeat protein 4 n=3 Tax=Andropogoneae RepID=B6TK73_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein At1g03110; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: trna (guanine-n -)-methyltransferase subunit wdr4-like 0.0
Internal
biog3_v1.0_unigene25112 biogeco3 v1.0 239
AutoFact: peptidyl-prolyl cis-trans isomerase SDCCAG10 [Arabidopsis thaliana] gb|AAS75308.1| multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gb|ABF57285.1| At4g33060 [Arabidopsis thaliana] gb|AEE86168.1| peptidyl-prolyl cis-t 0.0
FL-Next: tr=Peptidyl-prolyl isomerase CWC27; Zea mays (Maize). 0.0
Blast2go: peptidyl-prolyl cis-trans 0.0
Putative C-terminus
biog3_v1.0_unigene25324 biogeco3 v1.0 143
AutoFact: Unassigned protein
Blast2go: glycine-rich protein 0.0
unknown
biog3_v1.0_unigene25456 biogeco3 v1.0 313
AutoFact: WD-40 repeat protein [Solanum lycopersicum] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: wd40 repeat-containing protein smu1 0.0
Internal
biog3_v1.0_unigene25540 biogeco3 v1.0 169
AutoFact: actin-related protein C1B [Arabidopsis thaliana] gb|AAL27513.1|AF439845_1 At2g31300/F16D14.14 [Arabidopsis thaliana] gb|AAD20675.1| putative ARP2/3 protein complex subunit p41 [Arabidopsis thaliana] gb|AAN18136.1| At2g31300/F16D14.14 [Arabidopsis thaliana 0.0
Blast2go: actin-related protein c1a 0.0
unknown
biog3_v1.0_unigene25545 biogeco3 v1.0 408
AutoFact: pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal 7.0e-05
Blast2go: transcriptional corepressor leunig 3.10352e-31
unknown
biog3_v1.0_unigene25755 biogeco3 v1.0 423
AutoFact: Coatomer alpha subunit n=1 Tax=Hordeum vulgare subsp. vulgare RepID=Q6RYF4_HORVD 0.0
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: coatomer alpha 0.0
Internal
biog3_v1.0_unigene25784 biogeco3 v1.0 328
AutoFact: Serine/threonine-protein phosphatase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TP64_VITVI 0.0
FL-Next: sp=Serine/threonine-protein phosphatase BSL1 homolog; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: serine threonine protein phosphatase 0.0
Internal
biog3_v1.0_unigene25786 biogeco3 v1.0 413
AutoFact: Calreticulin n=2 Tax=Pinaceae RepID=Q9FYV2_PINTA 0.0
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: calreticulin precursor 0.0
C-terminus
biog3_v1.0_unigene25837 biogeco3 v1.0 289
AutoFact: ATP binding microtubule motor family protein n=2 Tax=Arabidopsis RepID=F4ICA0_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromosome-associated kinesin 0.0
Internal
biog3_v1.0_unigene26177 biogeco3 v1.0 542
AutoFact: [R] COG2319 FOG: WD40 repeat 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
biog3_v1.0_unigene26182 biogeco3 v1.0 279
AutoFact: Coatomer alpha subunit n=1 Tax=Hordeum vulgare subsp. vulgare RepID=Q6RYF4_HORVD 0.0
FL-Next: sp=Coatomer subunit alpha-3; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: coatomer alpha 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain