Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: biogeco3 v1.0

Name: WD40 repeat

Term: IPR001680  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene4633 biogeco3 v1.0 671
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB11582.1| unnamed protein product [Arabidopsis thaliana] gb|AED96466.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: wd repeat-containing protein 44-like 0.0
Internal
biog3_v1.0_unigene4634 biogeco3 v1.0 514
AutoFact: F-box and wd40 domain protein, putative n=1 Tax=Ricinus communis RepID=B9S6L1_RICCO 0.0
FL-Next: sp=F-box/WD-40 repeat-containing protein At5g21040; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: at5g21040-like protein 0.0
C-terminus
biog3_v1.0_unigene4661 biogeco3 v1.0 361
AutoFact: breast carcinoma amplified sequence 3-like protein [Oryza sativa Japonica Group] 2.0e-22
Blast2go: protein 0.0
unknown
biog3_v1.0_unigene4698 biogeco3 v1.0 394
AutoFact: Unassigned protein
FL-Next: sp=U3 small nucleolar RNA-associated protein 18 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: u3 small nucleolar rna-associated protein 18 homolog 0.0
Internal
biog3_v1.0_unigene4736 biogeco3 v1.0 313
AutoFact: Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform n=3 Tax=rosids RepID=Q9FVD4_MEDSV 0.0
Blast2go: serine threonine protein phosphatase 2a 55 kda regulatory subunit b beta isoform-like 0.0
unknown
biog3_v1.0_unigene4772 biogeco3 v1.0 290
AutoFact: [R] COG2319 FOG: WD40 repeat 0.0
Blast2go: flowering time control protein fy 0.0
Putative coding
biog3_v1.0_unigene4799 biogeco3 v1.0 252
AutoFact: GTP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SRI2_RICCO 0.0
FL-Next: Isoform 2 of Dynamin-like protein ARC5 OS=Arabidopsis thaliana GN=ARC5 0.0
Blast2go: gtp binding 0.0
Internal
biog3_v1.0_unigene4818 biogeco3 v1.0 520
AutoFact: PPR domain containing protein 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 7.73783e-41
Internal
biog3_v1.0_unigene4820 biogeco3 v1.0 731
AutoFact: Protein translocase subunit secA (Fragment) n=2 Tax=Vitis vinifera RepID=E0CR18_VITVI 0.0
FL-Next: sp=Protein translocase subunit SecA; Gracilaria tenuistipitata var. liui (Red alga). Plastid; Chloroplast. 0.0
Blast2go: preprotein translocase seca-like protein 0.0
Internal
biog3_v1.0_unigene4825 biogeco3 v1.0 340
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene4931 biogeco3 v1.0 409
AutoFact: Unassigned protein
FL-Next: tr=WD-40 repeat family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: wd repeat-containing 0.0
Putative C-terminus
biog3_v1.0_unigene5041 biogeco3 v1.0 248
AutoFact: putative WD-40 repeat protein [Trifolium pratense] 0.0
FL-Next: sp=Ribosome biogenesis protein BOP1 homolog; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Blast2go: ribosome biogenesis protein bop1 homolog 0.0
C-terminus
biog3_v1.0_unigene5065 biogeco3 v1.0 3215
AutoFact: coatomer subunit beta'-2 [Arabidopsis thaliana] sp|Q9C827.1|COB22_ARATH RecName: Full=Coatomer subunit beta'-2; AltName: Full=Beta'-coat protein 2; Short=Beta'-COP 2 gb|AAG51545.1|AC037424_10 coatomer complex subunit, putative; 33791-27676 [Arabidopsis th 0.0
FL-Next: sp=Coatomer subunit beta'-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: coatomer subunit beta -3 0.0
C-terminus
biog3_v1.0_unigene5111 biogeco3 v1.0 665
AutoFact: coatomer subunit alpha-1 [Arabidopsis thaliana] sp|Q94A40.2|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 gb|AAC28519.1| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 fro 0.0
FL-Next: sp=Coatomer subunit alpha-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: coatomer alpha 0.0
Internal
biog3_v1.0_unigene5112 biogeco3 v1.0 739
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene5116 biogeco3 v1.0 449
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAC41980.1| unknown protein [Arabidopsis thaliana] gb|AAO64896.1| At4g34280 [Arabidopsis thaliana] gb|AEE86354.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene5140 biogeco3 v1.0 1167
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAL86002.1| unknown protein [Arabidopsis thaliana] gb|AAN71963.1| unknown protein [Arabidopsis thaliana] gb|AEE35239.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: angio-associated migratory cell 0.0
C-terminus
biog3_v1.0_unigene5242 biogeco3 v1.0 291
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAK50091.1|AF372951_1 At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AAN72242.1| At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AEE36064.1| transducin/WD-40 repeat-containing protein [Arab 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene5263 biogeco3 v1.0 313
AutoFact: transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] gb|AAC63653.1| unknown protein [Arabidopsis thaliana] gb|AAM15129.1| unknown protein [Arabidopsis thaliana] gb|AEC10921.1| transducin family protein / WD-40 repeat family prote 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u3 small nucleolar rna-associated protein 0.0
C-terminus
biog3_v1.0_unigene5304 biogeco3 v1.0 710
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01754.1| putative protein [Arabidopsis thaliana] gb|AAL36367.1| unknown protein [Arabidopsis thaliana] gb|AAM14196.1| unknown protein [Arabidopsis thaliana] gb|AED92176.1| transducin/ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosome biogenesis protein wdr12 homolog 0.0
C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain