Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene1 biogeco3 v1.0 470
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S290_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding 0.0
Putative C-terminus
biog3_v1.0_unigene9 biogeco3 v1.0 290
• AutoFact: RNA-binding protein MEI2, putative; 36123-32976 [Arabidopsis thaliana] 0.0
• Blast2go: protein mei2-like 2-like 0.0
unknown
biog3_v1.0_unigene47 biogeco3 v1.0 590
• AutoFact: putative splicing factor [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 39-like 0.0
N-terminus
biog3_v1.0_unigene67 biogeco3 v1.0 1363
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
biog3_v1.0_unigene142 biogeco3 v1.0 323
• AutoFact: Ribonucleic acid binding protein S1, putative n=1 Tax=Ricinus communis RepID=B9RI44_RICCO 2.00386e-43
• Blast2go: ribonucleic acid binding protein 0.0
unknown
biog3_v1.0_unigene200 biogeco3 v1.0 393
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 3.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna and export factor binding 0.0
C-terminus
biog3_v1.0_unigene224 biogeco3 v1.0 392
• AutoFact: Ninja-family protein AFP3 n=1 Tax=Arabidopsis thaliana RepID=AFP3_ARATH 3.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ninja-family protein afp3 3.08565e-15
Putative Complete
biog3_v1.0_unigene243 biogeco3 v1.0 1202
• AutoFact: RNA-binding protein, putative [Musa acuminata] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
N-terminus
biog3_v1.0_unigene295 biogeco3 v1.0 264
• AutoFact: MEI2-like protein 4 [Arabidopsis thaliana] sp|Q9LYN7.1|AML4_ARATH RecName: Full=Protein MEI2-like 4; Short=AML4; AltName: Full=MEI2-like protein 4 emb|CAB87285.1| Mei2-like protein [Arabidopsis thaliana] dbj|BAE99028.1| Mei2-like protein [Arabidopsis thal 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: protein mei2-like 4-like 0.0
Internal
biog3_v1.0_unigene384 biogeco3 v1.0 232
• AutoFact: pre-mRNA processing factor [Triticum aestivum] 6.0e-37
• Blast2go: splicing arginine serine-rich 7 0.0
unknown
biog3_v1.0_unigene400 biogeco3 v1.0 1186
• AutoFact: nucleic acid binding protein1 [Zea mays] gb|AAA33486.1| nucleic acid-binding protein [Zea mays] gb|ACG38158.1| ribonucleoprotein [Zea mays] gb|ACL52389.1| unknown [Zea mays] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 31 kda chloroplastic-like 0.0
Putative Complete
biog3_v1.0_unigene442 biogeco3 v1.0 594
• AutoFact: copper ion binding protein, putative; K13171 serine/arginine repetitive matrix protein 1 1.0e-06
• Blast2go: protein 4.95543e-08
Coding
biog3_v1.0_unigene485 biogeco3 v1.0 397
• AutoFact: glycine-rich RNA-binding protein PsGRBP [Pisum sativum] gb|ACI15745.1| glycine-rich RNA-binding protein [Pisum sativum] 4.0e-12
• Blast2go: glycine-rich rna-binding protein 2 6.82991e-30
unknown
biog3_v1.0_unigene571 biogeco3 v1.0 793
• AutoFact: homeodomain-leucine zipper protein 56 [Glycine max] 8.00001e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: homeobox-leucine zipper protein athb-6-like 0.0
Putative N-terminus
biog3_v1.0_unigene697 biogeco3 v1.0 369
• AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE83159.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog3_v1.0_unigene721 biogeco3 v1.0 1043
• AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 7.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing factor 1 0.0
Internal
biog3_v1.0_unigene748 biogeco3 v1.0 782
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: tho complex subunit 0.0
C-terminus
biog3_v1.0_unigene768 biogeco3 v1.0 1476
• AutoFact: putative DNA binding protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding post-transcriptional regulator csx1-like 0.0
C-terminus
biog3_v1.0_unigene837 biogeco3 v1.0 960
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 1.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
biog3_v1.0_unigene840 biogeco3 v1.0 1790
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAL67015.1| putative DNA binding protein ACBF [Arabidopsis thaliana] gb|AAM45052.1| putative DNA binding protein ACBF [Arabidopsis thaliana] gb|AED92689.1| RNA recognition motif-containing 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: uncharacterized rna-binding isoform 1 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain