Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: Double-stranded RNA-binding

Term: IPR001159  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene15678 biogeco3 v1.0 301
AutoFact: DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] dbj|BAB11511.1| ATP-dependent RNA helicase A-like protein [Arabidopsis thaliana] gb|AED90801.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] 2.0e-10
FL-Next: tr=ATP binding protein, putative, expressed; Triticum aestivum (Wheat). 0.0
Blast2go: dea(d h)-box rna helicase family protein 9.78615e-13
Putative C-terminus
biog3_v1.0_unigene15696 biogeco3 v1.0 297
AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 0.0
FL-Next: sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable atp-dependent rna helicase ythdc2-like 0.0
Internal
biog3_v1.0_unigene16014 biogeco3 v1.0 270
AutoFact: beta-glucosidase [Arabidopsis thaliana] emb|CAB61946.1| beta-D-glucan exohydrolase-like protein [Arabidopsis thaliana] gb|AAL32794.1| beta-D-glucan exohydrolase-like protein [Arabidopsis thaliana] gb|AAM13345.1| beta-D-glucan exohydrolase-like protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: beta-d-glucan exohydrolase-like protein 0.0
Internal
biog3_v1.0_unigene16449 biogeco3 v1.0 284
AutoFact: regulatory associated protein of mTOR [Arabidopsis thaliana] sp|Q93YQ1.1|RTOR1_ARATH RecName: Full=Regulatory-associated protein of TOR 1; AltName: Full=Protein RAPTOR 1; AltName: Full=Protein RAPTOR 1B; Short=AtRaptor1b gb|AAL24320.1| Unknown protein [Ar 0.0
FL-Next: sp=Regulatory-associated protein of TOR 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: regulatory-associated protein of tor 1-like 0.0
C-terminus
biog3_v1.0_unigene18735 biogeco3 v1.0 165
AutoFact: Unassigned protein
FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase ii c-terminal domain phosphatase-like 1-like 0.0
Putative N-terminus
biog3_v1.0_unigene19025 biogeco3 v1.0 154
AutoFact: DsRNA-specific nuclease dicer and related ribonuclease n=2 Tax=Physcomitrella patens RepID=A9RV91_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: endoribonuclease dicer 0.0
Internal
biog3_v1.0_unigene19331 biogeco3 v1.0 240
AutoFact: Double-stranded RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RZ63_RICCO 0.0
FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase ii c-terminal domain phosphatase-like 1-like 0.0
Internal
biog3_v1.0_unigene20510 biogeco3 v1.0 245
AutoFact: BcpLH protein [Brassica rapa subsp. pekinensis] gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus] 9.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dsrna-binding protein 0.0
N-terminus
biog3_v1.0_unigene21261 biogeco3 v1.0 428
AutoFact: CAF protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: endoribonuclease dicer 0.0
Putative C-terminus
biog3_v1.0_unigene21697 biogeco3 v1.0 264
AutoFact: double-stranded RNA-binding (DsRBD) domain-containing protein [Musa acuminata] 0.0
Blast2go: dsrna-binding protein 3 0.0
unknown
biog3_v1.0_unigene21815 biogeco3 v1.0 233
AutoFact: Double-stranded RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RH31_RICCO 9.99995e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: double-stranded rna-binding protein 2-like 0.0
Putative N-terminus
biog3_v1.0_unigene22059 biogeco3 v1.0 258
AutoFact: regulatory associated protein of mTOR [Arabidopsis thaliana] sp|Q93YQ1.1|RTOR1_ARATH RecName: Full=Regulatory-associated protein of TOR 1; AltName: Full=Protein RAPTOR 1; AltName: Full=Protein RAPTOR 1B; Short=AtRaptor1b gb|AAL24320.1| Unknown protein [Ar 0.0
FL-Next: sp=Regulatory-associated protein of TOR 2; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: regulatory-associated protein of tor 1-like 0.0
Internal
biog3_v1.0_unigene25984 biogeco3 v1.0 171
AutoFact: Hydrolase, hydrolyzing O-glycosyl compounds, putative n=1 Tax=Ricinus communis RepID=B9SD66_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lysosomal beta glucosidase-like 0.0
Internal
biog3_v1.0_unigene26604 biogeco3 v1.0 305
AutoFact: Fructose-bisphosphate aldolase n=2 Tax=Picea sitchensis RepID=A9NUC9_PICSI 0.0
FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain