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Assembly Name: biogeco3 v1.0

Name: Carbamoyl-phosphate synthetase, large subunit, ATP-binding

Term: IPR005479  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene20170 biogeco3 v1.0 365
AutoFact: fimbrin 2 [Arabidopsis thaliana] 0.0
FL-Next: sp=Fimbrin-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: fimbrin-like protein 2-like 0.0
Internal
biog3_v1.0_unigene20291 biogeco3 v1.0 243
AutoFact: Scarecrow-like 1 transcription factor (Fragment) n=1 Tax=Pinus pinaster RepID=B1PPU0_PINPS 0.0
Blast2go: gras family transcription factor 0.0
Putative coding
biog3_v1.0_unigene20527 biogeco3 v1.0 401
AutoFact: pfam03514, GRAS, GRAS family transcription factor 0.0
FL-Next: sp=Chitin-inducible gibberellin-responsive protein 2; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: chitin-inducible gibberellin-responsive protein 0.0
Internal
biog3_v1.0_unigene20570 biogeco3 v1.0 113
AutoFact: putative clathrin assembly protein [Arabidopsis thaliana] sp|P94017.2|CAP9_ARATH RecName: Full=Putative clathrin assembly protein At1g14910 gb|AAM20134.1| unknown protein [Arabidopsis thaliana] gb|AEE29241.1| putative clathrin assembly protein [Arabidopsi 0.0
Blast2go: clathrin assembly protein at2g01600-like isoform 1 0.0
unknown
biog3_v1.0_unigene20786 biogeco3 v1.0 321
AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 2.0e-21
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon unclassified 6.55626e-26
Putative N-terminus
biog3_v1.0_unigene20981 biogeco3 v1.0 323
AutoFact: putative ribosomal S1 protein (with alternative splicing) [Oryza sativa Japonica Group] gb|ABF99860.1| S1 RNA binding domain containing protein, expressed [Oryza sativa Japonica Group] gb|EEC76515.1| hypothetical protein OsI_14295 [Oryza sativa Indica Gro 2.0e-22
Blast2go: protein 1.06389e-35
unknown
biog3_v1.0_unigene21039 biogeco3 v1.0 289
AutoFact: ribosomal protein S1-like RNA-binding domain-containing protein [Arabidopsis thaliana] dbj|BAB01847.1| unnamed protein product [Arabidopsis thaliana] gb|AAK83625.1| AT3g23700/MYM9_3 [Arabidopsis thaliana] gb|AAM98102.1| At3g23700/MYM9_3 [Arabidopsis thali 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 30s ribosomal protein s1 homolog 0.0
Internal
biog3_v1.0_unigene21323 biogeco3 v1.0 296
AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 0.0
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: rna-directed dna polymerase (reverse transcriptase) 0.0
Putative C-terminus
biog3_v1.0_unigene21532 biogeco3 v1.0 389
AutoFact: Putative carbamoyl phosphate synthase large subunit n=1 Tax=Nicotiana tabacum RepID=Q8L6J9_TOBAC 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: carbamoyl-phosphate synthase large chain-like 0.0
Internal
biog3_v1.0_unigene21729 biogeco3 v1.0 268
AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 1.0e-23
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon unclassified 3.33279e-29
Putative N-terminus
biog3_v1.0_unigene23120 biogeco3 v1.0 143
AutoFact: AP-1 complex subunit gamma-2, putative n=1 Tax=Ricinus communis RepID=B9S4M0_RICCO 0.0
Blast2go: ap-1 complex subunit gamma-2 0.0
unknown
biog3_v1.0_unigene23289 biogeco3 v1.0 228
AutoFact: pfam01425, Amidase, Amidase 2.8026e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: amidase family protein 0.0
Internal
biog3_v1.0_unigene23504 biogeco3 v1.0 314
AutoFact: Unassigned protein
FL-Next: tr=Os12g0566500 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: uncharacterized protein 3.91803e-42
C-terminus
biog3_v1.0_unigene24038 biogeco3 v1.0 270
AutoFact: Bidirectional sugar transporter SWEET16 n=2 Tax=Oryza sativa RepID=SWT16_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cytochrome c oxidoreductase 0.0
Internal
biog3_v1.0_unigene24589 biogeco3 v1.0 292
AutoFact: Chitin-inducible gibberellin-responsive protein, putative n=1 Tax=Ricinus communis RepID=B9S2N0_RICCO 0.0
FL-Next: tr=SCARECROW; Pinus sylvestris (Scots pine). 0.0
Blast2go: scarecrow-like protein 1-like 0.0
Internal
biog3_v1.0_unigene24687 biogeco3 v1.0 229
AutoFact: Acetyl-CoA carboxylase n=7 Tax=rosids RepID=D2CFN2_9ROSI 9.0e-18
FL-Next: sp=Acetyl-CoA carboxylase 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: acetyl- carboxylase 3.47949e-21
Putative N-terminus
biog3_v1.0_unigene24729 biogeco3 v1.0 560
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold 0.0
Putative Complete
biog3_v1.0_unigene24741 biogeco3 v1.0 382
AutoFact: Ubiquitin-activating enzyme E1b, putative n=1 Tax=Ricinus communis RepID=B9RH95_RICCO 0.0
FL-Next: Isoform 2 of SUMO-activating enzyme subunit 2 OS=Arabidopsis thaliana GN=SAE2 0.0
Blast2go: sumo-activating enzyme subunit 2 0.0
Internal
biog3_v1.0_unigene25399 biogeco3 v1.0 244
AutoFact: MtN3_slv domain containing protein 6.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: bidirectional sugar transporter sweet4-like 0.0
N-terminus
biog3_v1.0_unigene25798 biogeco3 v1.0 578
AutoFact: Acetyl-CoA carboxylase n=7 Tax=rosids RepID=D2CFN2_9ROSI 0.0
FL-Next: sp=Acetyl-CoA carboxylase 2; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: acetyl- carboxylase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain