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Assembly Name: biogeco3 v1.0

Name: Reverse transcriptase, RNA-dependent DNA polymerase

Term: IPR013103  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene9185 biogeco3 v1.0 852
AutoFact: S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI 0.0
FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosylmethionine decarboxylase proenzyme 0.0
C-terminus
biog3_v1.0_unigene9281 biogeco3 v1.0 714
AutoFact: ARGONAUTE 1 n=2 Tax=Nicotiana RepID=D6RUV9_TOBAC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: argonaute protein group 0.0
Complete
biog3_v1.0_unigene9320 biogeco3 v1.0 379
AutoFact: Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7U6B4_VITVI 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
biog3_v1.0_unigene9438 biogeco3 v1.0 321
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAD3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead box rna helicase 0.0
Putative N-terminus
biog3_v1.0_unigene9546 biogeco3 v1.0 533
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: dna binding 0.0
Internal
biog3_v1.0_unigene9805 biogeco3 v1.0 531
AutoFact: Dynamin central region; Dynamin GTPase effector [Medicago truncatula] 7.00649e-45
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: dynamin-related protein 3a-like 0.0
C-terminus
biog3_v1.0_unigene9873 biogeco3 v1.0 461
AutoFact: pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein 8.0e-17
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: sodium calcium exchanger family protein 0.0
Putative N-terminus
biog3_v1.0_unigene10054 biogeco3 v1.0 1045
AutoFact: Putative pol polyprotein n=1 Tax=Brassica oleracea var. botrytis RepID=A2T1U5_BRAOB 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
N-terminus
biog3_v1.0_unigene10336 biogeco3 v1.0 358
AutoFact: CCAAT-binding transcription factor [Medicago truncatula] 6.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear transcription factor y subunit a-1 0.0
Internal
biog3_v1.0_unigene10359 biogeco3 v1.0 327
AutoFact: Ubiquitin carboxyl-terminal hydrolase (Fragment) n=3 Tax=Vitis vinifera RepID=E0CSV0_VITVI 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 14; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ubiquitin carboxyl-terminal hydrolase 0.0
Internal
biog3_v1.0_unigene10414 biogeco3 v1.0 789
AutoFact: Syntaxin, putative n=1 Tax=Ricinus communis RepID=B9RPA3_RICCO 0.0
FL-Next: sp=Syntaxin-32; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: qa- syp3 sed5p syntaxin 5-type 0.0
Internal
biog3_v1.0_unigene10570 biogeco3 v1.0 1095
AutoFact: putative 5-3 exoribonuclease [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
biog3_v1.0_unigene10600 biogeco3 v1.0 381
AutoFact: Protein SEY1, putative n=1 Tax=Ricinus communis RepID=B9SN36_RICCO 0.0
FL-Next: sp=Protein ROOT HAIR DEFECTIVE 3 homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein root hair defective 3 homolog 1-like 0.0
Internal
biog3_v1.0_unigene10695 biogeco3 v1.0 754
AutoFact: Oxidoreductase, putative n=1 Tax=Ricinus communis RepID=B9SFV3_RICCO 0.0
FL-Next: sp=Uncharacterized PKHD-type hydroxylase At1g22950; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: uncharacterized pkhd-type hydroxylase at1g22950-like 0.0
C-terminus
biog3_v1.0_unigene10729 biogeco3 v1.0 933
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100852591 0.0
N-terminus
biog3_v1.0_unigene10756 biogeco3 v1.0 486
AutoFact: Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7U6B4_VITVI 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 10; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
biog3_v1.0_unigene10940 biogeco3 v1.0 410
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Internal
biog3_v1.0_unigene11016 biogeco3 v1.0 1606
AutoFact: Protein SEY1, putative n=1 Tax=Ricinus communis RepID=B9SN36_RICCO 0.0
FL-Next: sp=Protein ROOT HAIR DEFECTIVE 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein root hair defective 3 homolog 1-like 0.0
Internal
biog3_v1.0_unigene11052 biogeco3 v1.0 404
AutoFact: Protein SEY1, putative n=1 Tax=Ricinus communis RepID=B9SN36_RICCO 0.0
FL-Next: sp=Protein ROOT HAIR DEFECTIVE 3; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein root hair defective 3 homolog 1-like 0.0
C-terminus
biog3_v1.0_unigene11073 biogeco3 v1.0 919
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 0.0
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain