Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: Reverse transcriptase, RNA-dependent DNA polymerase

Term: IPR013103  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene17089 biogeco3 v1.0 423
• AutoFact: AMP-binding protein n=1 Tax=Brassica napus RepID=Q96337_BRANA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: annotation was added to scaffolds in november 2011~long-chain-fatty-acid ligase 0.0
C-terminus
biog3_v1.0_unigene17093 biogeco3 v1.0 345
• AutoFact: TRAPPC10 domain containing protein 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: protein club 0.0
C-terminus
biog3_v1.0_unigene17126 biogeco3 v1.0 256
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: retrotransposon unclassified 0.0
Internal
biog3_v1.0_unigene17167 biogeco3 v1.0 356
• AutoFact: ABCG subfamily transporter n=2 Tax=Solanum tuberosum RepID=F5C1T7_SOLTU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pleiotropic drug abc transporter family protein 0.0
Internal
biog3_v1.0_unigene17345 biogeco3 v1.0 240
• AutoFact: mate efflux domain-containing protein [Arabidopsis thaliana] dbj|BAB02363.1| unnamed protein product [Arabidopsis thaliana] gb|AAU05531.1| At3g21690 [Arabidopsis thaliana] gb|AEE76538.1| mate efflux domain-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transparent testa 12 0.0
Internal
biog3_v1.0_unigene17459 biogeco3 v1.0 327
• AutoFact: Alanyl-tRNA synthetase n=4 Tax=Arabidopsis RepID=SYA_ARATH 0.0
• Blast2go: alanyl-trna synthetase 0.0
unknown
biog3_v1.0_unigene17518 biogeco3 v1.0 243
• AutoFact: hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] gb|AAK32768.1|AF361600_1 AT5g02970/F9G14_280 [Arabidopsis thaliana] emb|CAB86051.1| putative protein [Arabidopsis thaliana] gb|AAP21157.1| At5g02970/F9G14_280 [Arabidopsis thaliana] gb|AED90 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: alpha beta fold family protein 0.0
Internal
biog3_v1.0_unigene17548 biogeco3 v1.0 191
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06298_PINCU 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: reverse transcriptase 6.00486e-38
Internal
biog3_v1.0_unigene17592 biogeco3 v1.0 297
• AutoFact: mate efflux domain-containing protein [Arabidopsis thaliana] dbj|BAB02363.1| unnamed protein product [Arabidopsis thaliana] gb|AAU05531.1| At3g21690 [Arabidopsis thaliana] gb|AEE76538.1| mate efflux domain-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transparent testa 12 0.0
Internal
biog3_v1.0_unigene17600 biogeco3 v1.0 226
• AutoFact: putative inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa Japonica Group] dbj|BAD54694.1| putative inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: inositol-tetrakisphosphate 1-kinase 4-like 0.0
N-terminus
biog3_v1.0_unigene17604 biogeco3 v1.0 283
• AutoFact: alpha-mannosidase [Arabidopsis thaliana] emb|CAA66821.1| alpha-mannosidase [Arabidopsis thaliana] emb|CAA72432.1| alpha-mannosidase precursor [Arabidopsis thaliana] dbj|BAB01735.1| alpha-mannosidase [Arabidopsis thaliana] gb|AAK62592.1| AT3g26720/MLJ15_12 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: lysosomal alpha-mannosidase-like 0.0
Internal
biog3_v1.0_unigene17696 biogeco3 v1.0 253
• AutoFact: Signal recognition particle subunit srp72, putative n=1 Tax=Ricinus communis RepID=B9RMK3_RICCO 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: signal recognition particle subunit srp72 0.0
Putative C-terminus
biog3_v1.0_unigene17792 biogeco3 v1.0 213
• AutoFact: putative inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa Japonica Group] dbj|BAD54694.1| putative inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa Japonica Group] 0.0
• Blast2go: inositol-tetrakisphosphate 1-kinase 4-like 0.0
Putative coding
biog3_v1.0_unigene18036 biogeco3 v1.0 478
• AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 0.0
unknown
biog3_v1.0_unigene18062 biogeco3 v1.0 190
• AutoFact: RNA ligase isoform 1 [Triticum aestivum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: rna ligase 0.0
Internal
biog3_v1.0_unigene18254 biogeco3 v1.0 249
• AutoFact: DENN (AEX-3) domain-containing protein n=2 Tax=Arabidopsis thaliana RepID=F4IUH2_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
• Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene18258 biogeco3 v1.0 435
• AutoFact: serine protease-like protein [Nicotiana tabacum] 0.0
• FL-Next: sp=Xylem serine proteinase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: subtilisin-like protease-like 0.0
Internal
biog3_v1.0_unigene18279 biogeco3 v1.0 288
• AutoFact: RVT_2 domain containing protein 5.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: unknown [Picea sitchensis] 2.85746e-23
Putative N-terminus
biog3_v1.0_unigene18280 biogeco3 v1.0 230
• AutoFact: putative CCAAT-binding transcription factor [Oryza sativa Japonica Group] 3.0e-40
• Blast2go: protein 0.0
unknown
biog3_v1.0_unigene18366 biogeco3 v1.0 187
• AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: gag-pol polyprotein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain