Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v1.2

Name: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Term: GO:0000184  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.2_unigene1861 SustainPine v1.2 610
• AutoFact: HIV Tat-specific factor 1 [Arabidopsis thaliana] emb|CAC01867.1| putative protein [Arabidopsis thaliana] gb|AAY25436.1| At5g16260 [Arabidopsis thaliana] dbj|BAF01062.1| hypothetical protein [Arabidopsis thaliana] gb|AED92266.1| HIV Tat-specific factor 1 [ 9.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing factor u2af-associated 0.0
C-terminus
sp_v1.2_unigene4838 SustainPine v1.2 1972
• AutoFact: Nonsense-mediated decay UPF3 [Medicago truncatula] 2.0e-09
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: smg-4 upf3-like protein 9.90923e-18
C-terminus
sp_v1.2_unigene9873 SustainPine v1.2 974
• AutoFact: Nonsense-mediated decay UPF3 [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: protein 0.0
N-terminus
sp_v1.2_unigene11148 SustainPine v1.2 1405
• AutoFact: HIV Tat-specific factor 1 [Arabidopsis thaliana] emb|CAC01867.1| putative protein [Arabidopsis thaliana] gb|AAY25436.1| At5g16260 [Arabidopsis thaliana] dbj|BAF01062.1| hypothetical protein [Arabidopsis thaliana] gb|AED92266.1| HIV Tat-specific factor 1 [ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
N-terminus
sp_v1.2_unigene22690 SustainPine v1.2 811
• AutoFact: Nonsense-mediated decay UPF3 [Medicago truncatula] 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: smg-4 upf3-like protein 0.0
N-terminus
sp_v1.2_unigene35025 SustainPine v1.2 582
• AutoFact: PREDICTED: serine/threonine-protein kinase SMG1 [Monodelphis domestica] 6.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: hypothetical protein SORBIDRAFT_01g008695 7.93638e-26
Putative Complete
sp_v1.2_unigene40067 SustainPine v1.2 447
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: telomerase activating protein est1 2.71768e-32
Internal
sp_v1.2_unigene42701 SustainPine v1.2 172
• AutoFact: EST1 domain containing protein 6.0e-09
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: telomerase activating protein est1 6.0515e-18
Internal
sp_v1.2_unigene62838 SustainPine v1.2 807
• AutoFact: Regulator of nonsense transcripts, putative n=1 Tax=Ricinus communis RepID=B9SD55_RICCO 0.0
• FL-Next: tr=Regulator of nonsense transcripts, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: rna binding protein 0.0
N-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain