Sustainpine_db
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Assembly Name: SustainPine v1.2

Name: double-strand break repair via homologous recombination

Term: GO:0000724  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.2_unigene943 SustainPine v1.2 1135
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAA77766.1| FAS2 [Arabidopsis thaliana] dbj|BAB11430.1| FAS2 [Arabidopsis thaliana] gb|AED97930.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transducin wd40 domain-containing protein 0.0
C-terminus
sp_v1.2_unigene2648 SustainPine v1.2 1921
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AED97928.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: transducin wd40 domain-containing protein 0.0
C-terminus
sp_v1.2_unigene3313 SustainPine v1.2 843
AutoFact: Structural maintenance of chromosomes 6 smc6, putative n=1 Tax=Ricinus communis RepID=B9R9U6_RICCO 0.0
FL-Next: tr=Structural maintenance of chromosomes 6 smc6, putative; Ricinus communis (Castor bean). 0.0
Blast2go: structural maintenance of chromosomes 6 0.0
Internal
sp_v1.2_unigene4741 SustainPine v1.2 1424
AutoFact: Excision repair cross-complementing 1 ercc1, putative n=1 Tax=Ricinus communis RepID=B9RF25_RICCO 0.0
FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: excision repair cross-complementing 1 0.0
Complete
sp_v1.2_unigene6555 SustainPine v1.2 892
AutoFact: Unassigned protein
FL-Next: tr=Putative FAS1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: chromatin assembly factor-1 6.90846e-21
C-terminus
sp_v1.2_unigene8110 SustainPine v1.2 695
AutoFact: DNA helicase hus2, putative n=1 Tax=Ricinus communis RepID=B9SXG0_RICCO 4.0e-22
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna helicase 6.52976e-22
Putative C-terminus
sp_v1.2_unigene9202 SustainPine v1.2 939
AutoFact: DNA repair protein XRCC2-like protein [Arabidopsis thaliana] gb|AED97910.1| DNA repair protein XRCC2-like protein [Arabidopsis thaliana] 3.0e-37
FL-Next: sp=DNA repair protein XRCC2 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair protein xrcc2-like protein 4.2039e-45
Putative C-terminus
sp_v1.2_unigene11099 SustainPine v1.2 474
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein 1.32478e-21
Internal
sp_v1.2_unigene22156 SustainPine v1.2 609
AutoFact: putative DNA repair protein rhp54 [Oryza sativa Japonica Group] 8.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rad54-like protein 0.0
C-terminus
sp_v1.2_unigene22531 SustainPine v1.2 530
AutoFact: SMC-like protein [Arabidopsis thaliana] gb|AAD54770.1|AF120933_1 SMC-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: structural maintenance of chromosomes 6 0.0
C-terminus
sp_v1.2_unigene31135 SustainPine v1.2 621
AutoFact: rad1; RAD1 DNA repair protein homolog; K10848 DNA excision repair protein ERCC-4 [EC:3.1.-.-] 0.0
FL-Next: sp=DNA repair endonuclease UVH1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: hypothetical protein SELMODRAFT_232247 0.0
C-terminus
sp_v1.2_unigene31675 SustainPine v1.2 737
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: PREDICTED: hypothetical protein 2.57839e-43
Internal
sp_v1.2_unigene34573 SustainPine v1.2 546
AutoFact: DNA repair endonuclease UVH1 n=6 Tax=Arabidopsis RepID=XPF_ARATH 0.0
FL-Next: Isoform 3 of DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 0.0
Blast2go: AF277377_15' repair endonuclease 0.0
Internal
sp_v1.2_unigene35027 SustainPine v1.2 486
AutoFact: Isoform 2 of DNA repair protein XRCC2 homolog n=1 Tax=Arabidopsis thaliana RepID=Q682D3-2 1.0e-26
FL-Next: Isoform 2 of DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana GN=XRCC2 0.0
Blast2go: PREDICTED: hypothetical protein 7.08034e-34
N-terminus
sp_v1.2_unigene39255 SustainPine v1.2 480
AutoFact: OsRad54 protein n=1 Tax=Oryza sativa Japonica Group RepID=A4PBL4_ORYSJ 0.0
FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: hypothetical protein SELMODRAFT_137237 0.0
Internal
sp_v1.2_unigene40744 SustainPine v1.2 270
AutoFact: DNA Helicase [Arabidopsis thaliana] 2.0e-23
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna helicase 1.45035e-28
Internal
sp_v1.2_unigene42102 SustainPine v1.2 518
AutoFact: endonuclease [Arabidopsis thaliana] 1.0e-15
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: crossover junction endonuclease mus81 2.42852e-19
Internal
sp_v1.2_unigene42752 SustainPine v1.2 369
AutoFact: DNA Helicase [Arabidopsis thaliana] 0.0
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna helicase 0.0
Internal
sp_v1.2_unigene42866 SustainPine v1.2 366
AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 2.0e-11
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair helicase 2.34725e-27
Internal
sp_v1.2_unigene43239 SustainPine v1.2 514
AutoFact: ultraviolet hypersensitive 1 [Arabidopsis thaliana] 0.0
FL-Next: Isoform 2 of DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 0.0
Blast2go: dna repair endonuclease uvh1 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain