Sustainpine_db
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Assembly Name: SustainPine v1.2

Name: nuclear mRNA splicing, via spliceosome

Term: GO:0000398  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.2_unigene72 SustainPine v1.2 1880
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing factor-like protein 0.0
Putative Complete
sp_v1.2_unigene1442 SustainPine v1.2 2071
• AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 small nuclear ribonucleoprotein-70k 0.0
N-terminus
sp_v1.2_unigene4329 SustainPine v1.2 1288
• AutoFact: arginine/serine-rich-splicing factor RSP31 [Arabidopsis thaliana] sp|P92964.2|RSP31_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP31 gb|AAL27502.1|AF439831_1 AT3g61860/F21F14_30 [Arabidopsis thaliana] gb|AAM78075.1| AT3g61860/F21F14_30 [Arab 0.0
• FL-Next: sp=Arginine/serine-rich-splicing factor RSP31; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: arginine serine-rich splicing 0.0
Complete
sp_v1.2_unigene14259 SustainPine v1.2 2414
• AutoFact: Ribonucleic acid binding protein S1, putative n=1 Tax=Ricinus communis RepID=B9RI44_RICCO 2.00386e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein arginine serine-rich 45 0.0
Complete
sp_v1.2_unigene14793 SustainPine v1.2 1176
• AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 small nuclear ribonucleoprotein-70k 0.0
N-terminus
sp_v1.2_unigene15458 SustainPine v1.2 787
• AutoFact: U1 small nuclear ribonucleoprotein-70K [Arabidopsis thaliana] gb|AAD12776.1| U1 snRNP 70K truncated protein [Arabidopsis thaliana] gb|AAD12774.1| U1 snRNP 70K truncated protein [Arabidopsis thaliana] gb|AEE78693.1| U1 small nuclear ribonucleoprotein-70K [ 6.0e-10
• FL-Next: Isoform Short of U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 0.0
• Blast2go: u1 small nuclear ribonucleoprotein-70k 1.15539e-10
N-terminus
sp_v1.2_unigene16060 SustainPine v1.2 1978
• AutoFact: putative arginine/serine-rich protein [Arabidopsis thaliana] 9.99967e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein arginine serine-rich 45 0.0
Complete
sp_v1.2_unigene17706 SustainPine v1.2 994
• AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 snrnp 70k protein 0.0
N-terminus
sp_v1.2_unigene19972 SustainPine v1.2 1166
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing factor-like protein 0.0
Complete
sp_v1.2_unigene21124 SustainPine v1.2 1494
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich-splicing factor rsp40 0.0
Complete
sp_v1.2_unigene24631 SustainPine v1.2 1816
• AutoFact: U2 small nuclear ribonucleoprotein A n=1 Tax=Gossypium hirsutum RepID=D6N3G9_GOSHI 0.0
• FL-Next: sp=U2 small nuclear ribonucleoprotein A'; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: u2 small nuclear ribonucleoprotein a 0.0
Complete
sp_v1.2_unigene26693 SustainPine v1.2 1009
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich splicing 0.0
C-terminus
sp_v1.2_unigene56363 SustainPine v1.2 1774
• AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 small nuclear ribonucleoprotein-70k 0.0
N-terminus
sp_v1.2_unigene60965 SustainPine v1.2 501
• AutoFact: Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum] 6.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 3.04309e-39
N-terminus
sp_v1.2_unigene65811 SustainPine v1.2 602
• AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 snrnp 70k protein 8.85831e-36
N-terminus
sp_v1.2_unigene82196 SustainPine v1.2 1222
• AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 small nuclear ribonucleoprotein-70k 0.0
N-terminus
sp_v1.2_unigene88604 SustainPine v1.2 473
• AutoFact: U1 snRNP-interacting 70 kDa protein n=1 Tax=Triticum aestivum RepID=Q2QKB6_WHEAT 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 snrnp 70k protein 3.67088e-27
N-terminus
sp_v1.2_unigene89349 SustainPine v1.2 365
• AutoFact: Putative U1 small nuclear ribonucleoprotein n=3 Tax=Oryza sativa RepID=Q94LP1_ORYSJ 8.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 snrnp 70k protein 1.15135e-22
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain