SoleaDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: Solea solea v1.0 (global assembly)

UniGene Name: solea_solea_v1.0_unigene474206

Length: 223 nt

UniGene Fasta

>solea_solea_v1.0_unigene474206
GCGCCGAGGACAAACGGCGTCAGCTTCCTGAAGACGATGGAGTTACTCGGTTTGTTTCCCAGGAACACCTGGTGACCACAGAGAGGGCGGAGCTAAAACCTCTTAGGTCACATGTTAACACCACATTAACGTTCATGTGTGAGTGCGTTGTCGTTACTTTGTGCGGCAGCAGCTTCTCCAGAGCGTCTCCGCGCACGCCCGCGGCCTCCAGCTCTGTACGAGC

Ace file of the UniGene solea_solea_v1.0_unigene474206

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
FL-Next	sp=Glucose-6-phosphate isomerase; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica).	-	-	5.0e-14	76%
Sma3	Glucose-6-phosphate isomerase	-	-	1.913e-08	-
AutoFact	Glucose-6-phosphate isomerase (Fragment) n=1 Tax=Gambusia holbrooki RepID=B3F2G6_GAMHO	-	-	2.0e-11	76%

Source	ECs	Term	Type	e value	Identity
Sma3	glucose-6-phosphate isomerase	EC:5.3.1.9	-	1.913e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	1.913e-08	%
Sma3	Pentose phosphate pathway	00030	1.913e-08	%
Sma3	Starch and sucrose metabolism	00500	1.913e-08	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	1.913e-08	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.913e-08	%
Sma3	Biosynthesis of terpenoids and steroids	01062	1.913e-08	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.913e-08	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	1.913e-08	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	1.913e-08	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	1.913e-08	%
Sma3	Biosynthesis of plant hormones	01070	1.913e-08	%
Sma3	Metabolic pathways	01100	1.913e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	1.913e-08	%
Sma3	Microbial metabolism in diverse environments	01120	1.913e-08	%

Source	Gene names
Sma3	GPI (3 of 3); LOC100712428;

Source	GOs	Term	Type	e value	Identity
Sma3	glucose-6-phosphate isomerase activity	GO:0004347	Molecular Function	2.165e-08	-
Sma3	gluconeogenesis	GO:0006094	Biological Process	7.85e-07	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphoglucose isomerase (PGI)	IPR001672	-	2.101e-08	-
Sma3	Phosphoglucose isomerase, conserved site	IPR018189	-	1.852e-08	-
Sma3	Phosphoglucose isomerase, C-terminal	IPR023096	-	1.299e-08	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: actinopterygii.fasta

Fln subject: I3JK87

Fln msg: Unexpected STOP codon in 5 prime region, Distance to subject end: 65 aas, not enough to search stop codon your sequence is shorter than subject: 30 - 154

Fln protein: LRPLCGHQVFLGNKPSNSIVFRKLTPFVLG

Protein Length: 30

Fln nts: GCTCGTACAGAGCTGGAGGCCGCGGGCGTGCGCGGAGACGCTCTGGAGAAGCTGCTGCCGCACAAAGTAACGACAACGCACTCACACATGAACGTTAATGTGGTGTTAACATGTGACCTAAGAGGTTTTAGCTCCGCCCTCTCTGTGGTCACCAGGTGTTCCTGGGAAACAAACCGAGTAACTCCATCGTCTTCAGGAAGCTGACGCCGTTTGTCCTCGGCCGC

Fln Alignment:

solea_solea_v1.0_unigene474206___LRPLCGHQVFLGNKPSNSIVFRKLTPFVLG
I3JK87_________________________LEKLLPHKVFLGNKPSNSIVFKKLTPFILG

Curation

No curations to show

Back