SoleaDB

Assembly Name: Solea solea v1.0 (global assembly)

UniGene Name: solea_solea_v1.0_unigene330414

Length: 4283 nt

UniGene Fasta

>solea_solea_v1.0_unigene330414
AGCACACGGAACAGCCTGAGCAGCCGGAGCAGCCGCTCAGTCGTGAAGCGTTTGCTGCTGACGCTGAGCAGAAGAGTCGATGGTCAGACAGTGAGAAAGATGTTATTACTGCTTTGTGGACAGAGGAAAAAACAGAACATGACACACAGTCTTCCTAATACACTTTTCCATGATAAAAGTAGACGCCACTATTGGCTACACACACANNNNNNNNNNNNNGCACACACAGCAAGGATTCCATGACAAAACAGGGCCACGCCGGCTAGAAGCTACCACGTGATAAACATCTGGCATGTCCACGGTCTACTTCACAAAACTAGAGCGACGAATGAATGTACTCCAACACCTGATTCCAGGATGGGGCTTGGAACATCTCCACCACATTTAATTTGCTCTCGTTTTTTTGTGACAGGAAAAAGAAAAAAAAAACAAAAATAAAGACAACAGAAAAAAAAGTTAACCCTACAAAGAAAACATTCTTTTTTTTTTTTATCTCTTAAAACTTTCTAACTCAAATTCCAAATGAACCAAGTCCAGTAGTTGTGACACTGAAAGCAACGCTTACATGTGTCAGTCTTTCTCTCCTAGACTAATATAAGGGGACGAGGGCGTCAGGTGTCTCAGGGGTGATATGCTCATACATAGTGAACCAAGGGGGAGTAGTGGGGGGGGGGGGGGGACAGGCCCAGTGTCCCACGCCTCAGCAATGAAGTCTCTTTGTGACAGTCTCACAGTCTCAAAGGAAGTTGGGAGGGGAAACAGAAGGGGAGGAATCAAGGATGTAAACTCAAGACGCCGCCAGTCCAACACAGCTCAGCTTCTCTCATCCCAGCAGCCACTGGGGCAGCCGCCTGGAATACAGCTCCACGACGGTTCTTTCTCCAGATCTTCTTCCTGATACTGAGTAAATCTGGCTCAACAGACGACTGGCTGCGGAGGAATCGCTGCAAAGTCCTCGCAGCCGTTTAAAAAGTGACGAGAGCGAGTCACAGGAGCGCCACGCGGCTCATTTCAGGTTTGCATAACAAACGTTGTGTGTGTGTGACCAAATGAAGACGCTTTTTTGTTGGTCATCTTCCAGTTTAGTGTGACGGTCATGGAGGATTTACATTAACGGGTTACTTTGACACTTGACAGTGGGCGGGTCTGACGGTTTCCATGGTAACCATCAATAACGGCTTTGTCTGAGAGCAGTTTGTGGGCCATTTTGTGTGCGAGCTGAACACATGACATGGTTTGATTATATTATTACATTTCATATCGCGTTTTGATCGGCTGATGCTCCCGCGGAACATTTCTCATCTTCTCGAAGGACACGCGACGCAGCTCGGCGACGTGATCGGGAAGTTATGCAAATGAAGCGGACGTCATTCCGTGGTGTGTGAAGGCCACCGTCGTTCCCCGACACATTTCAGAAGTGAGTGGAGGACTAAAGGTTACGCAGTGGACCTTTAAGAGATGATGATGATGATGATGCATGCTTTTTACAACATCAACAAACCTGGCAACCTCACGACAAGCATTTATTCACCAACAAACAAAGTCCCACATTGTTTGTTGGTGAATAAATGTTACAAACCGCTGTCCTTCGTTCATATTAATGTAAACGTTGAAACTTTTATATTAACGGATCAAAATGACTTGGTGCAGTGGTGTAAACTGTAGCCATAAAGAGAGTCTTCATGCGACTACAGCCCGTTTATCTCAGCACTAAACATGGAAGGTGACCAGCATTGTCCCAAAGCTGCAGCATCACAGCGGGTTTGTGATGCTGCGATGAAAAGACGACCGCTGCGATTCTTACGACAGGATATTTTAAGAGGAACCACTTAGTCTGACACGGGTCAGCGTGATATGAAGTGAGTGTCTGTGATATCCGTGTCCTACTACACTCACGAAACATCAAAGTGAAGATGTGGTGTCGAGACGTGGAGAGTCGTGGGAACGGACTGATGCTGGTTTCTGGCAACAGGTAGAATCTTAGGTAAAGAAAGCGGGAGAACCACGGGGAACATGGTGACGTTAAAAAAATGACGGGGAGAGAAGGGGATTGTTGAAAACTGCCGAGCATCTCAGCTGTGCATGTGTTTCAGTCTCAATATGAACACCGGGAAACGGAGAGGGGAAAAGGTTTCAGCTGTAAGCAAGACAAGAGTCTGGACGGATACAAGTGTTCTGTTCATATCGTTCATATCGTGATGGACTGAGTGTTGTCAAATGTGGATGATGAAAAAGGGAGGGAAGTGCCAGCCAGCACTGGTTTTGGTATATTGGTTTTGGCTGCAGATGGAGGATCAGTCAGGGTGGAAGGCTGGAGGGGTTTCAGGGATCTCTTGTCATGCGGGGGGGTAGAGACGGCGAGGACGTTTGCTCCAACGTCTCGTCTTCGCTGCCATAATGCATGGTGTTGCTGGGGATGACCATAGGTGAGGCCATGGAGATGGCGGCGCCGCCCATGGTGAACTGGTTGGTGACGGGATAGTAAGTACCGCTGCTGCTGGGGCCGGACTGGCCTGTGGAGGCTCCTTGCACAATGCCTGTGCTCATGATGGAGCCCATCCTGGAGTGGGTGTGGTTTACAATTCCTGTGTTCACTAGGGGGATGAGGTTGTTATGAGACACTGACGGGCCGCTGCCAATGACTGTGCTGAGGTCATAAGCTGCAGGCATCCCTGAAAAAGGGGTTCTTCAAGTCCAGGAGGTTGCTGGACTTTGATCCTGTCTGGTCCACCTGGGCGACAATACTGATGTCGTAGCTCTGCCTCCTGTTGGCCACCAGCACTGCAGTGCCGGACAACGTATCCCCAGCCTTGGTGAAGAGAGGAGACTGCAGCAGACAGCGGACCTGGTACCAATGGGTTAGAGGCTCTGTGGGTGCTGTTGACAGCCATACTGTCACCATGGATCCAATAAATGCCACATCAAACCAGAAAGCTAAGCCATGTACCAGACCAGAGTGCATCATGTGGAACTTAAAGGGAATCTCTATCCTGTAAAGATCCTCTTCTTTGGCATCCAGGAAGTTAACTGTGTGTTTGACTGATTTGGCCATCAGTATACGGATATCAAATGTGTCCACAATAGGCTGGCGGAAGTACTCATCCACAGCTGCTCCACGCAGAGCAGAGAGGTCTACGCCGTGGAATGAGGGCTGGTACCAGAAATTGGCCTTGGTGAACTGCTCCATGTAGAGCTGCTCGTCTGTGAAGGGGGCCAGGTGGACGTCACCGATGGTGGGGAACATTTTACCATTGGGTTTGAGGAACTTCTTGGCATGCAGGTAGCTCTCCAGCATTCGCTCATTAAACAACATGTAGCCCATCGGCTCTGAGATGATGATGTCAACCTGCTCCGGCAGCGTCACCTCCTCCACCTTCCCCGTGATGACGACCACGCGCTCGCCTAAACGGTTGCTGTTTACCAGCACCTCGGCATGTTGTGCCATGGTGCTGGCCTCCACAGCGTAGACCTTCCTGGCTCCAGCTTGAGCTGCAAAGAAAGAGAGGATCCCCGAGCCGCATCCCACATCCAGCACCACCTTGTCCTTGAAGTCGCTGTGGTTTTGGAGAATAGCCCTCTGGTAAGTCCCTGTCCGAACATAGTCCTGCATCATGTTCTGTTGCTGAGAGAGGTAGCCATAAAACTGGAAGTACTGTACAGCAGAGGACTCCTCTGTTCTATCGCTGAAGACCGAGTGCTCACAAAAGTGCCCACGACTGTTTTTCAGGAGATTATAAAACGACTGGAAGTCTGCAGGTGACGAGAACTGCAGCAGGACGCTGTTGCAGCCCAGCGTGATGATGAACGACTGCTTCCCCACGCGGCTGCACTCCGTCTCCCTGGAGACCGAACACTTGAACACACTCGCGTCCTCTCCATTGGAGAGATTGATGAGGGCTGAGTCTTGTGTGCTTTTGATTTCTAGCCTCAGGGGCTGCTGCTCTGAGTGTCGCTGTATGTCTCCATTTGCGTCTCCGATGGAGAGGAGCCGCACGCCGGGGAACACCGAGACCGCCATCTTCGATCTGGAAGTCGAGACAGGTCGGTGGTGCTCACATCCAACAGCGCACTGCTCTCTGCTGGAGGCAGAGTGGGCATCCGCCGCGAGATGAGCCAGTCCAACAGCGTCACCCGGCGGATCAAAGCGGGTATTGTCGGAACAAAGGTGGCTTACGTCATGACGATTTACGACTCTCATATTTATCGTTGCAAGGAAAAACAAAGAGAGAAATACAGAAAAGAGTGTATTAAATCTTACAAAAAAATTAAAACAAACAAAAAAA

Ace file of the UniGene solea_solea_v1.0_unigene330414

Annotations

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica).	-	-	2.0e-36	98%
Sma3	Histone-arginine methyltransferase CARM1	-	-	1.979e-13	-
AutoFact	Unassigned protein	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	3.948e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130		3.948e-06	%
Sma3	Tetracycline biosynthesis	00253		3.948e-06	%
Sma3	Histidine metabolism	00340		3.948e-06	%
Sma3	Tyrosine metabolism	00350		3.948e-06	%
Sma3	Phenylalanine metabolism	00360		3.948e-06	%
Sma3	Tryptophan metabolism	00380		3.948e-06	%
Sma3	Benzoxazinoid biosynthesis	00402		3.948e-06	%
Sma3	Selenocompound metabolism	00450		3.948e-06	%
Sma3	Biosynthesis of 12-, 14- and 16-membered macrolides	00522		3.948e-06	%
Sma3	Polycyclic aromatic hydrocarbon degradation	00624		3.948e-06	%
Sma3	Methane metabolism	00680		3.948e-06	%
Sma3	Porphyrin and chlorophyll metabolism	00860		3.948e-06	%
Sma3	Carotenoid biosynthesis	00906		3.948e-06	%
Sma3	Phenylpropanoid biosynthesis	00940		3.948e-06	%
Sma3	Flavonoid biosynthesis	00941		3.948e-06	%
Sma3	Anthocyanin biosynthesis	00942		3.948e-06	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		3.948e-06	%
Sma3	Isoquinoline alkaloid biosynthesis	00950		3.948e-06	%
Sma3	Insect hormone biosynthesis	00981		3.948e-06	%
Sma3	Biosynthesis of type II polyketide products	01057		3.948e-06	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063		3.948e-06	%
Sma3	Metabolic pathways	01100		3.948e-06	%
Sma3	Biosynthesis of secondary metabolites	01110		3.948e-06	%
Sma3	Histone-arginine N-methyltransferase.	EC:2.1.1.125	-	1.054e-07	-

Source	Gene names
Sma3	CARM1; carm1; carm1l;

Source	GOs	Term	Type	e value	Identity
Sma3	methyltransferase activity	GO:0008168	Molecular Function	0.0	-
Sma3	protein methyltransferase activity	GO:0008276	Molecular Function	1.493e-08	-
Sma3	ligand-dependent nuclear receptor transcription coactivator activity	GO:0030374	Molecular Function	5.418e-09	-
Sma3	protein-arginine omega-N asymmetric methyltransferase activity	GO:0035242	Molecular Function	8.163e-12	-
Sma3	histone methyltransferase activity (H3-R17 specific)	GO:0035642	Molecular Function	4.948e-14	-
Sma3	transcription regulatory region DNA binding	GO:0044212	Molecular Function	1.06e-06	-
Sma3	histone acetyl-lysine binding	GO:0070577	Molecular Function	6.082e-08	-
Sma3	protein methylation	GO:0006479	Biological Process	0.0	-
Sma3	pathogenesis	GO:0009405	Biological Process	0.0	-
Sma3	regulation of skeletal muscle fiber development	GO:0048742	Biological Process	1.23e-07	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal L11 methyltransferase, PrmA	IPR010456	-	1.036e-08	-
Sma3	Histone-arginine methyltransferase CARM1, N-terminal	IPR020989	-	0.0	-
Sma3		IPR025797	-	0.0	-
Sma3	Protein arginine N-methyltransferase	IPR025799	-	0.0	-
Sma3	Protein arginine N-methyltransferase PRMT6	IPR026132	-	9.495e-07	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: actinopterygii.fasta

Fln subject: I3JG94

Fln msg: Unexpected STOP codon in 5 prime region, Unexpected STOP codon at 3' end. your sequence is shorter than subject: 116 - 591 . Was predicted as Complete, but is very much shorter than de subject

Fln protein: MPAAYDLSTVIGSGPSVSHNNLIPLVNTGIVNHTHSRMGSIMSTGIVQGASTGQSGPSSSGTYYPVTNQFTMGGAAISMASPMVIPSNTMHYGSEDETLEQTSSPSLPPRMTRDP*

Protein Length: 116

Fln nts: TTTTTTTGTTTGTTTTAATTTTTTTGTAAGATTTAATACACTCTTTTCTGTATTTCTCTCTTTGTTTTTCCTTGCAACGATAAATATGAGAGTCGTAAATCGTCATGACGTAAGCCACCTTTGTTCCGACAATACCCGCTTTGATCCGCCGGGTGACGCTGTTGGACTGGCTCATCTCGCGGCGGATGCCCACTCTGCCTCCAGCAGAGAGCAGTGCGCTGTTGGATGTGAGCACCACCGACCTGTCTCGACTTCCAGATCGAAGATGGCGGTCTCGGTGTTCCCCGGCGTGCGGCTCCTCTCCATCGGAGACGCAAATGGAGACATACAGCGACACTCAGAGCAGCAGCCCCTGAGGCTAGAAATCAAAAGCACACAAGACTCAGCCCTCATCAATCTCTCCAATGGAGAGGACGCGAGTGTGTTCAAGTGTTCGGTCTCCAGGGAGACGGAGTGCAGCCGCGTGGGGAAGCAGTCGTTCATCATCACGCTGGGCTGCAACAGCGTCCTGCTGCAGTTCTCGTCACCTGCAGACTTCCAGTCGTTTTATAATCTCCTGAAAAACAGTCGTGGGCACTTTTGTGAGCACTCGGTCTTCAGCGATAGAACAGAGGAGTCCTCTGCTGTACAGTACTTCCAGTTTTATGGCTACCTCTCTCAGCAACAGAACATGATGCAGGACTATGTTCGGACAGGGACTTACCAGAGGGCTATTCTCCAAAACCACAGCGACTTCAAGGACAAGGTGGTGCTGGATGTGGGATGCGGCTCGGGGATCCTCTCTTTCTTTGCAGCTCAAGCTGGAGCCAGGAAGGTCTACGCTGTGGAGGCCAGCACCATGGCACAACATGCCGAGGTGCTGGTAAACAGCAACCGTTTAGGCGAGCGCGTGGTCGTCATCACGGGGAAGGTGGAGGAGGTGACGCTGCCGGAGCAGGTTGACATCATCATCTCAGAGCCGATGGGCTACATGTTGTTTAATGAGCGAATGCTGGAGAGCTACCTGCATGCCAAGAAGTTCCTCAAACCCAATGGTAAAATGTTCCCCACCATCGGTGACGTCCACCTGGCCCCCTTCACAGACGAGCAGCTCTACATGGAGCAGTTCACCAAGGCCAATTTCTGGTACCAGCCCTCATTCCACGGCGTAGACCTCTCTGCTCTGCGTGGAGCAGCTGTGGATGAGTACTTCCGCCAGCCTATTGTGGACACATTTGATATCCGTATACTGATGGCCAAATCAGTCAAACACACAGTTAACTTCCTGGATGCCAAAGAAGAGGATCTTTACAGGATAGAGATTCCCTTTAAGTTCCACATGATGCACTCTGGTCTGGTACATGGCTTAGCTTTCTGGTTTGATGTGGCATTTATTGGATCCATGGTGACAGTATGGCTGTCAACAGCACCCACAGAGCCTCTAACCCATTGGTACCAGGTCCGCTGTCTGCTGCAGTCTCCTCTCTTCACCAAGGCTGGGGATACGTTGTCCGGCACTGCAGTGCTGGTGGCCAACAGGAGGCAGAGCTACGACATCAGTATTGTCGCCCAGGTGGACCAGACAGGATCAAAGTCCAGCAACCTCCTGGACTTGAAGAACCCCTTTTTCAGGG_-_ATGCCTGCAGCTTATGACCTCAGCACAGTCATTGGCAGCGGCCCGTCAGTGTCTCATAACAACCTCATCCCCCTAGTGAACACAGGAATTGTAAACCACACCCACTCCAGGATGGGCTCCATCATGAGCACAGGCATTGTGCAAGGAGCCTCCACAGGCCAGTCCGGCCCCAGCAGCAGCGGTACTTACTATCCCGTCACCAACCAGTTCACCATGGGCGGCGCCGCCATCTCCATGGCCTCACCTATGGTCATCCCCAGCAACACCATGCATTATGGCAGCGAAGACGAGACGTTGGAGCAAACGTCCTCGCCGTCTCTACCCCCCCGCATGACAAGAGATCCCTGA___AAACCCCTCCAGCCTTCCACCCTGACTGATCCTCCATCTGCAGCCAAAACCAATATACCAAAACCAGTGCTGGCTGGCACTTCCCTCCCTTTTTCATCATCCACATTTGACAACACTCAGTCCATCACGATATGAACGATATGAACAGAACACTTGTATCCGTCCAGACTCTTGTCTTGCTTACAGCTGAAACCTTTTCCCCTCTCCGTTTCCCGGTGTTCATATTGAGACTGAAACACATGCACAGCTGAGATGCTCGGCAGTTTTCAACAATCCCCTTCTCTCCCCGTCATTTTTTTAACGTCACCATGTTCCCCGTGGTTCTCCCGCTTTCTTTACCTAAGATTCTACCTGTTGCCAGAAACCAGCATCAGTCCGTTCCCACGACTCTCCACGTCTCGACACCACATCTTCACTTTGATGTTTCGTGAGTGTAGTAGGACACGGATATCACAGACACTCACTTCATATCACGCTGACCCGTGTCAGACTAAGTGGTTCCTCTTAAAATATCCTGTCGTAAGAATCGCAGCGGTCGTCTTTTCATCGCAGCATCACAAACCCGCTGTGATGCTGCAGCTTTGGGACAATGCTGGTCACCTTCCATGTTTAGTGCTGAGATAAACGGGCTGTAGTCGCATGAAGACTCTCTTTATGGCTACAGTTTACACCACTGCACCAAGTCATTTTGATCCGTTAATATAAAAGTTTCAACGTTTACATTAATATGAACGAAGGACAGCGGTTTGTAACATTTATTCACCAACAAACAATGTGGGACTTTGTTTGTTGGTGAATAAATGCTTGTCGTGAGGTTGCCAGGTTTGTTGATGTTGTAAAAAGCATGCATCATCATCATCATCATCTCTTAAAGGTCCACTGCGTAACCTTTAGTCCTCCACTCACTTCTGAAATGTGTCGGGGAACGACGGTGGCCTTCACACACCACGGAATGACGTCCGCTTCATTTGCATAACTTCCCGATCACGTCGCCGAGCTGCGTCGCGTGTCCTTCGAGAAGATGAGAAATGTTCCGCGGGAGCATCAGCCGATCAAAACGCGATATGAAATGTAATAATATAATCAAACCATGTCATGTGTTCAGCTCGCACACAAAATGGCCCACAAACTGCTCTCAGACAAAGCCGTTATTGATGGTTACCATGGAAACCGTCAGACCCGCCCACTGTCAAGTGTCAAAGTAACCCGTTAATGTAAATCCTCCATGACCGTCACACTAAACTGGAAGATGACCAACAAAAAAGCGTCTTCATTTGGTCACACACACACAACGTTTGTTATGCAAACCTGAAATGAGCCGCGTGGCGCTCCTGTGACTCGCTCTCGTCACTTTTTAAACGGCTGCGAGGACTTTGCAGCGATTCCTCCGCAGCCAGTCGTCTGTTGAGCCAGATTTACTCAGTATCAGGAAGAAGATCTGGAGAAAGAACCGTCGTGGAGCTGTATTCCAGGCGGCTGCCCCAGTGGCTGCTGGGATGAGAGAAGCTGAGCTGTGTTGGACTGGCGGCGTCTTGAGTTTACATCCTTGATTCCTCCCCTTCTGTTTCCCCTCCCAACTTCCTTTGAGACTGTGAGACTGTCACAAAGAGACTTCATTGCTGAGGCGTGGGACACTGGGCCTGTCCCCCCCCCCCCCCCACTACTCCCCCTTGGTTCACTATGTATGAGCATATCACCCCTGAGACACCTGACGCCCTCGTCCCCTTATATTAGTCTAGGAGAGAAAGACTGACACATGTAAGCGTTGCTTTCAGTGTCACAACTACTGGACTTGGTTCATTTGGAATTTGAGTTAGAAAGTTTTAAGAGATAAAAAAAAAAAAGAATGTTTTCTTTGTAGGGTTAACTTTTTTTTCTGTTGTCTTTATTTTTGTTTTTTTTTTCTTTTTCCTGTCACAAAAAAACGAGAGCAAATTAAATGTGGTGGAGATGTTCCAAGCCCCATCCTGGAATCAGGTGTTGGAGTACATTCATTCGTCGCTCTAGTTTTGTGAAGTAGACCGTGGACATGCCAGATGTTTATCACGTGGTAGCTTCTAGCCGGCGTGGCCCTGTTTTGTCATGGAATCCTTGCTGTGTGTGCNNNNNNNNNNNNNTGTGTGTGTAGCCAATAGTGGCGTCTACTTTTATCATGGAAAAGTGTATTAGGAAGACTGTGTGTCATGTTCTGTTTTTTCCTCTGTCCACAAAGCAGTAATAACATCTTTCTCACTGTCTGACCATCGACTCTTCTGCTCAGCGTCAGCAGCAAACGCTTCACGACTGAGCGGCTGCTCCGGCTGCTCAGGCTGTTCCGTGTGCT

Fln Alignment:

solea_solea_v1.0_unigene330414___SGMPAAYDLSTVIGSGPSVSHNNLIPLVNTGIVNHTHSRMGSIMSTGIVQGASTGQSGPSSSGTYYPVTNQFTMGGAAISMASPMVIPSNTMHYGS
I3JG94_________________________SGMPAAYDLSTVIGSGPSVSHNNLIPLVNTGIVNHTHSRMGSIMSTGIVQGATTGQSGPSSSGTYYPVTNQFTMGGAAISMASPMVIPSNTMHYGS

SSRs (tot: 2)

Start position	End position	Sequence	Length
1033	1044	TG TG TG TG TG TG	12
1458	1476	GAT GAT GAT GAT GAT GAT G	19

Curation

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