SoleaDB

Assembly Name: Solea solea v1.0 (global assembly)

UniGene Name: solea_solea_v1.0_unigene187857

Length: 1953 nt

UniGene Fasta

>solea_solea_v1.0_unigene187857
AAATCTGATTAATGAACATTTATTTTAAGGTGACTATGGTAAGTCTGAACTTTTTACCAAACTGTGACGGTCTACAAAATATCCACTTACTGCCTGCCACACATTTAAAGCTCAAATGATTTTATCTTTTGGCAACATTACACATGTTTCGCTCAACAAGTCTCGTTCTCAAGTCTCATGAGATTTCAGAGTGAGAGAGAGGGTTTGTCAGGGGGGGAATATCCACTGGCAGTTGTTGCAGCTACCACTGGGGGCAGATTTCAGTGGGTAGCATTCATTTACACACCCACTTTTATGTGTAAATGTGAGTTATTTTGACCAGAGGGGGCAGCACTCAGACGTGAGCGGTGTTTATATTTTATCTAGCTCTCTGTAAAAAAAAAAGCAAAATAAGCACATTTCCTTTGTCGACCTGCGTGTTCTTTTATCAAAACATGATAAAGAAATGAAAGTGCTCAGTCATAGAGTTACGATATCATACTTCAGAGGGAGGATAATACTGAACACTGATGAGATAAAAACTTCAGATACATCCGTGCTTCTGTGTTTGCGTCACAGCTGCAGCCACATGCACCGACTCAACTGCTGTCAACACCGGAGCGTGAGGAGGTGAAAAAGCAGAACAATATTCACTGACATTCAGCTGAGGGACAAGAGAGGGGAACAATGAACATGTGAAAAAAACATGTGTGTGTGTGTGTGTGGGGGGGGAACAGGTGTCAAGACAAGAGAGATTAACTTAAATCTATCTCCTTTCATTTTGTTTCTGACTTAATGCTGGACTTAAAGTCCATTTACTTCAACTTGAATAATCCCTGTTCATTACAACCTTTGTCTCATTGTATTAGTTTCAACTCCACCAACAAGTTTTTTTTGTGTTTGGTGCCATTTGTCTTCCTCGTTTGAAATCCTCAAATCTGATTTCCCTGACATTTTGTAGAGGGGTGAGGCATCACTCAATCATCTTCTACTGCTTTATCCTCCACATGAGGGTTGCTGGTGCCAATCCCAGCTGACAAAGGGCAAAAGGCGGGGCACACCCTGGACAGGTTGCCACTCCATCACAGGGACTAACCACTACACCCTTGACCCAAAATCAAACCTATCAAATGATGGAGCAGATTAAATTGAGAAGGTGGATACAGGATTGTTTTCCCCTCAAACTCTCATTAATATTAGCGTTTAAGTGTTCTTGTATGTATGTGCTCTCAGAGCACGTTTTAGTTCTTATCGTAATAATAAATCAAACAGCTTATATTATCTCATTTTAAAAAATCCTCTGCCTGCACATTTGAAATGGATCAACACGGTAGATCTTAGTCGTTGCGATCATGCCGATTGCCCAGTCACATGTTTAGGTGCCGTGTTCCCGCCTCTCAGCAGAGAAGTTATTATACCTGATAAAACGATGGGCAAAAATAAAACACAGAACGCAGTCGAAGCTGACGGGACAAGGACAACTGAAGCTAAACAATGAGATTAGGCAGCTGTGACAGCCTCAGCTTTAAGTCACACGAAGGAACAATTCACCACAAGGTCAACCCAGGAGTTCAGGGTCAAAGTAATGCAACAGTACTTGAAGAGTCAGCGAAGGGCAGCAGTGGGACTTCATCTCTTTATCCTTCCTTTCAAACGCTGACTCTGTCTCTGGATGGCTGTTAATGTCGCCAGGGGCTGGGACACCAAGGAGTGTCTGGGTACAACAGACAATGGACAGACCTGAACCTCGTAGGGTCTTCATTAAGGGACAACGGGCCTTTCACATTGACAGTGTTTCTGTTGTTTTCCACAGTGCCGTAGCTGAGGGTAACCTAACATGAGAACAACAAAAACAAGCTTTTGATATCTGTAGTAGCAGAGCTTATAAATGTGTGTGTGTGTGTGTACCTGGCTGTGTATGTCTGACACCAGTCCCAGGTTCTCCAGGTGAGAGTGGAACAGAGCTGACCGGAT

Ace file of the UniGene solea_solea_v1.0_unigene187857

Annotations

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Uncharacterized protein; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica).	-	-	4.0e-27	85%
Sma3	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	-	-	1.084e-16	-
AutoFact	Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe n=3 Tax=Phasianidae RepID=LFNG_CHICK	-	-	5.0e-17	73%

Source	ECs	Term	Type	e value	Identity
Sma3	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	EC:2.4.1.222	-	1.084e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Other types of O-glycan biosynthesis	00514		1.084e-16	%

Source	Gene names
Sma3	LFNG; RFNG; lfng; rfng;

Source	GOs	Term	Type	e value	Identity
Sma3	membrane	GO:0016020	Cellular Component	1.079e-09	-
Sma3	integral component of Golgi membrane	GO:0030173	Cellular Component	0.0	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	3.206e-24	-
Sma3	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity	GO:0033829	Molecular Function	0.0	-
Sma3	pattern specification process	GO:0007389	Biological Process	0.0	-
Sma3	positive regulation of protein binding	GO:0032092	Biological Process	5.582e-12	-
Sma3	negative regulation of neuron differentiation	GO:0045665	Biological Process	2.279e-08	-
Sma3	positive regulation of Notch signaling pathway	GO:0045747	Biological Process	5.277e-13	-
Sma3	hypochord development	GO:0055016	Biological Process	8.822e-13	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Fringe-like	IPR003378	-	0.0	-
Sma3	Fringe	IPR017374	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: actinopterygii.fasta

Fln subject: I3IUC6

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. your sequence is shorter than subject: 98 - 356

Fln protein: SGQLCSTLTWRTWDWCQTYTARYTHTHTFISSATTDIKSLFLLFSC*VTLSYGTVENNRNTVNVKGPLSLNEDPTRFRSVHCLLYPDTPWCPSPWRH*

Protein Length: 98

Fln nts: ATCCGGTCAGCTCTGTTCCACTCTCACCTGGAGAACCTGGGACTGGTGTCAGACATACACAGCCAGGTACACACACACACACACATTTATAAGCTCTGCTACTACAGATATCAAAAGCTTGTTTTTGTTGTTCTCATGTTAGGTTACCCTCAGCTACGGCACTGTGGAAAACAACAGAAACACTGTCAATGTGAAAGGCCCGTTGTCCCTTAATGAAGACCCTACGAGGTTCAGGTCTGTCCATTGTCTGTTGTACCCAGACACTCCTTGGTGTCCCAGCCCCTGGCGACATTAACAGCCATCCAGAGACAGAGTCAGCGTTTGAAAGGAAGGATAAAGAGATGAAGTCCCACTGCTGCCCTTCGCTGACTCTTCAAGTACTGTTGCATTACTTTGACCCTGAACTCCTGGGTTGACCTTGTGGTGAATTGTTCCTTTCGTGTGACTTAAAGCTGAGGCTGTCACAGCTGCCTAATCTCATTGTTTAGCTTCAGTTGTCCTTGTCCCGTCAGCTTCGACTGCGTTCTGTGTTTTATTTTTGCCCATCGTTTTATCAGGTATAATAACTTCTCTGCTGAGAGGCGGGAACACGGCACCTAAACATGTGACTGGGCAATCGGCATGATCGCAACGACTAAGATCTACCGTGTTGATCCATTTCAAATGTGCAGGCAGAGGATTTTTTAAAATGAGATAATATAAGCTGTTTGATTTATTATTACGATAAGAACTAAAACGTGCTCTGAGAGCACATACATACAAGAACACTTAAACGCTAATATTAATGAGAGTTTGAGGGGAAAACAATCCTGTATCCACCTTCTCAATTTAATCTGCTCCATCATTTGATAGGTTTGATTTTGGGTCAAGGGTGTAGTGGTTAGTCCCTGTGATGGAGTGGCAACCTGTCCAGGGTGTGCCCCGCCTTTTGCCCTTTGTCAGCTGGGATTGGCACCAGCAACCCTCATGTGGAGGATAAAGCAGTAGAAGATGATTGAGTGATGCCTCACCCCTCTACAAAATGTCAGGGAAATCAGATTTGAGGATTTCAAACGAGGAAGACAAATGGCACCAAACACAAAAAAAACTTGTTGGTGGAGTTGAAACTAATACAATGAGACAAAGGTTGTAATGAACAGGGATTATTCAAGTTGAAGTAAATGGACTTTAAGTCCAGCATTAAGTCAGAAACAAAATGAAAGGAGATAGATTTAAGTTAATCTCTCTTGTCTTGACACCTGTTCCCCCCCCACACACACACACACACATGTTTTTTTCACATGTTCATTGTTCCCCTCTCTTGTCCCTCAGCTGAATGTCAGTGAATATTGTTCTGCTTTTTCACCTCCTCACGCTCCGGTGTTGACAGCAGTTGAGTCGGTGCATGTGGCTGCAGCTGTGACGCAAACACAGAAGCACGGATGTATCTGAAGTTTTTATCTCATCAGTGTTCAGTATTATCCTCCCTCTGAAGTATGATATCGTAACTCTATGACTGAGCACTTTCATTTCTTTATCATGTTTTGATAAAAGAACACGCAGGTCGACAAAGGAAATGTGCTTATTTTGCTTTTTTTTTTACAGAGAGCTAGATAAAATATAAACACCGCTCACGTCTGAGTGCTGCCCCCTCTGGTCAAAATAACTCACATTTACACATAAAAGTGGGTGTGTAAATGAATGCTACCCACTGAAATCTGCCCCCAGTGGTAGCTGCAACAACTGCCAGTGGATATTCCCCCCCTGACAAACCCTCTCTCTCACTCTGAAATCTCATGAGACTTGAGAACGAGACTTGTTGAGCGAAACATGTGTAATGTTGCCAAAAGATAAAATCATTTGAGCTTTAAATGTGTGGCAGGCAGTAAGTGGATATTTTGTAGACCGTCACAGTTTGGTAAAAAGTTCAGACTTACCATAGTCACCTTAAAATAAATGTTCATTAATCAGATTT

Fln Alignment:

solea_solea_v1.0_unigene187857___VTLSYGTVENNRNTVNVKGPLSLNEDPTRFRSVHCLLYPDTPWCPSPWR
I3IUC6_________________________VTLSYGTVDNSRNIVNVKGPFSIEEDPTRFRSVHCLLYPDTPWCPGPWR

SSRs (tot: 2)

Start position	End position	Sequence	Length
687	704	TG TG TG TG TG TG TG TG TG	18
1869	1885	TG TG TG TG TG TG TG TG T	17

Curation

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